BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0809300 Os03g0809300|AK103140
(479 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16580.1 | chr4:9341152-9342555 REVERSE LENGTH=468 389 e-108
AT5G66720.1 | chr5:26639015-26640545 REVERSE LENGTH=415 345 3e-95
AT4G33500.1 | chr4:16112835-16116243 REVERSE LENGTH=725 184 1e-46
AT2G30170.1 | chr2:12879802-12881474 REVERSE LENGTH=299 150 1e-36
>AT4G16580.1 | chr4:9341152-9342555 REVERSE LENGTH=468
Length = 467
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/294 (63%), Positives = 230/294 (78%), Gaps = 2/294 (0%)
Query: 183 LRDFSTSCVAPYSAGATEHQLSLDEAVQDKQMDNSTVGPDGKPRAPGPLKLVSGSCYLPH 242
R +S SAG +SLD +V D+Q+ +S+ K PLKLVSGSCYLPH
Sbjct: 170 FRGLHSSLSNRLSAGNAP-DVSLDNSVTDEQVRDSSDSVAAK-LCTKPLKLVSGSCYLPH 227
Query: 243 PAKEATGGEDGHFICVDEQAIGVADGVGGWADHGVDAGLYAKELMSNSMSAIKDEPQGTI 302
P KEATGGED HFIC +EQA+GVADGVGGWA+ G+DAG Y++ELMSNS++AI+DEP+G+I
Sbjct: 228 PDKEATGGEDAHFICAEEQALGVADGVGGWAELGIDAGYYSRELMSNSVNAIQDEPKGSI 287
Query: 303 DPSRVLEKAYTCTKARGSSTACIVALKEQGIHAVNLGDSGFIIVRDGRTVLRSPVQQHDF 362
DP+RVLEKA+TCTK++GSSTACI+AL QG+HA+NLGDSGF++VR+G TV RSPVQQHDF
Sbjct: 288 DPARVLEKAHTCTKSQGSSTACIIALTNQGLHAINLGDSGFMVVREGHTVFRSPVQQHDF 347
Query: 363 NFTYQLESGGGSDLPSSAQTFHFPVAPGDVIIAGTDGLFDNLYSNEISAIVVEALRTGLE 422
NFTYQLESG DLPSS Q F VAPGDVIIAGTDGLFDNLY+NEI+AIVV A+R ++
Sbjct: 348 NFTYQLESGRNGDLPSSGQVFTVAVAPGDVIIAGTDGLFDNLYNNEITAIVVHAVRANID 407
Query: 423 PEXXXXXXXXXXXXXXMDRNRQSPFAAAAQEAGYRYFGGKLDDITVIVSYVTSA 476
P+ D+NRQ+PF+ AAQ+AG+RY+GGKLDDITV+VSYV ++
Sbjct: 408 PQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVAAS 461
>AT5G66720.1 | chr5:26639015-26640545 REVERSE LENGTH=415
Length = 414
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/294 (57%), Positives = 217/294 (73%), Gaps = 9/294 (3%)
Query: 184 RDFSTSCVAPYSAGATEHQLSLDEAVQDKQMDNSTVGPDGKPRAPGPLKLVSGSCYLPHP 243
+ TS +A +S G SL+ Q+ P + L+LVSGSCYLPHP
Sbjct: 129 KSVHTSPMACFSVGPAHELSSLNGGSQES--------PPTTTTSLKSLRLVSGSCYLPHP 180
Query: 244 AKEATGGEDGHFICVDEQAIGVADGVGGWADHGVDAGLYAKELMSNSMSAIKDEPQGT-I 302
KEATGGED HFIC +EQAIGVADGVGGWA+ GV+AGL+++ELMS S+SAI+++ +G+ I
Sbjct: 181 EKEATGGEDAHFICDEEQAIGVADGVGGWAEVGVNAGLFSRELMSYSVSAIQEQHKGSSI 240
Query: 303 DPSRVLEKAYTCTKARGSSTACIVALKEQGIHAVNLGDSGFIIVRDGRTVLRSPVQQHDF 362
DP VLEKA++ TKA+GSSTACI+ LK++G+HA+NLGDSGF +VR+G TV +SPVQQH F
Sbjct: 241 DPLVVLEKAHSQTKAKGSSTACIIVLKDKGLHAINLGDSGFTVVREGTTVFQSPVQQHGF 300
Query: 363 NFTYQLESGGGSDLPSSAQTFHFPVAPGDVIIAGTDGLFDNLYSNEISAIVVEALRTGLE 422
NFTYQLESG +D+PSS Q F V GDVI+AGTDG++DNLY+ EI+ +VV ++R GL+
Sbjct: 301 NFTYQLESGNSADVPSSGQVFTIDVQSGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLD 360
Query: 423 PEXXXXXXXXXXXXXXMDRNRQSPFAAAAQEAGYRYFGGKLDDITVIVSYVTSA 476
P+ +D+ RQSPFA AAQEAGYRY+GGKLDDIT +VSYVTS+
Sbjct: 361 PKGTAQKIAELARQRAVDKKRQSPFATAAQEAGYRYYGGKLDDITAVVSYVTSS 414
>AT4G33500.1 | chr4:16112835-16116243 REVERSE LENGTH=725
Length = 724
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 141/244 (57%), Gaps = 8/244 (3%)
Query: 233 LVSGSCYLPHPAKEATGGEDGHFICVDEQAIGVADGVGGWADHGVDAGLYAKELMSNSMS 292
L SG L P K G ED +FI IG+ADGV W+ G++ G+YA+ELMSN
Sbjct: 481 LDSGFASLQSPFKALAGREDAYFIS-HHNWIGIADGVSQWSFEGINKGMYAQELMSNCEK 539
Query: 293 AIKDEPQGTIDPSRVLEKAYTCTKARGSSTACIVALKEQGIHAVNLGDSGFIIVRDGRTV 352
I +E DP +VL ++ TK+ GSSTA I L +H N+GDSGF+++RDG TV
Sbjct: 540 IISNETAKISDPVQVLHRSVNETKSSGSSTALIAHLDNNELHIANIGDSGFMVIRDG-TV 598
Query: 353 LR--SPVQQHDFNFTYQLESGGGSDLPSSAQTFHFPVAPGDVIIAGTDGLFDNLYSNEIS 410
L+ SP+ H F + L G D+ A+ +H + GDV+IA TDGLFDNLY EI
Sbjct: 599 LQNSSPMFHH---FCFPLHITQGCDVLKLAEVYHVNLEEGDVVIAATDGLFDNLYEKEIV 655
Query: 411 AIVVEALRTGLEPEXXXXXXXXXXXXXXMDRNRQSPFAAAAQEAGYR-YFGGKLDDITVI 469
+IV +L+ LEP+ + ++PFA AA+E GY + GGKLD +TVI
Sbjct: 656 SIVCGSLKQSLEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVI 715
Query: 470 VSYV 473
+S+V
Sbjct: 716 ISFV 719
>AT2G30170.1 | chr2:12879802-12881474 REVERSE LENGTH=299
Length = 298
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 138/259 (53%), Gaps = 18/259 (6%)
Query: 231 LKLVSGSCYLPHPAKEATGGEDGHFICVDEQAI-GVADGVGGWADHGVDAGLYAKELMSN 289
L L G +PHP K GGED F+ + VADGV GWA+ VD L++KELM+N
Sbjct: 45 LSLSVGIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMAN 104
Query: 290 SMSAIKDEPQGTIDPSRVLEKAYTCTKARGSSTACIVALKEQGIHAV-NLGDSGFIIVRD 348
+ S + D+ + DP +++KA+T T +RGS+T + L+E GI + N+GD G ++R+
Sbjct: 105 A-SRLVDDQEVRYDPGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLRE 163
Query: 349 GRTVLRSPVQQHDFNFTYQLESGGGSDLPSSAQTFHFPVAPGDVIIAGTDGLFDNLYSNE 408
G+ + + Q+H F+ YQL S G + A V GDVI+ G+DGLFDN++ +E
Sbjct: 164 GQIIFATAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHE 223
Query: 409 ISAIVVEALRTGLEPEXXXXXXXXXXXXXXMDRNRQSPFAAAAQEAGY-----------R 457
I +IV + D +SP+A A+ G+ +
Sbjct: 224 IVSIVTKHTDVA----ESSRLLAEVASSHSRDTEFESPYALEARAKGFDVPLWKKVLGKK 279
Query: 458 YFGGKLDDITVIVSYVTSA 476
GGKLDD+TVIV+ V S+
Sbjct: 280 LTGGKLDDVTVIVAKVVSS 298
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,404,737
Number of extensions: 390159
Number of successful extensions: 720
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 4
Length of query: 479
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 377
Effective length of database: 8,310,137
Effective search space: 3132921649
Effective search space used: 3132921649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)