Os03g0802300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0802300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.51 | 0.246 | 10 | 1.01 | 0.176 | -0.445 | -0.691 | 0.404 | 0.431 | 9.26 | 0.78 | 89 | -- | -- |
| 27.9 | 0.246 | 10 | 0.991 | 0.19 | -0.455 | -0.322 | -- | 0.439 | 8.69 | 0.78 | 82 | -- | -- |
| 28.36 | 0.25 | 10 | 0.972 | 0.255 | -0.245 | -- | 0.0106 | 0.398 | 4.28 | 0.78 | 89 | -- | -- |
| 28.18 | 0.247 | 10 | 0.992 | 0.183 | -0.443 | -- | -- | 0.424 | 9.07 | 0.777 | 82 | -- | -- |
| 29.28 | 0.252 | 10 | 1.01 | -- | -0.319 | -- | -0.148 | 0.441 | -- | 0.6956 | 110 | -- | -- |
| 29.87 | 0.256 | 10 | 0.959 | 0.442 | -- | 0.0694 | -- | 0.393 | 1.73 | -- | -- | -- | -- |
| 29.89 | 0.256 | 10 | 0.956 | 0.442 | -- | -- | -- | 0.392 | 1.75 | -- | -- | -- | -- |
| 29.01 | 0.251 | 10 | 0.965 | -- | -0.35 | -- | -- | 0.435 | -- | 0.64 | 107 | -- | -- |
| 52.89 | 0.341 | 10 | -- | 0.292 | -0.204 | -- | -- | 0.295 | 3.6 | 1.63 | 85 | -- | -- |
| 41.78 | 0.302 | 10 | 0.975 | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
| 54 | 0.344 | 10 | -- | 0.46 | -- | -- | -- | 0.286 | 1.81 | -- | -- | -- | -- |
| 54.08 | 0.343 | 10 | -- | -- | -0.346 | -- | -- | 0.34 | -- | 1.561 | 92 | -- | -- |
| 66.83 | 0.382 | 10 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.38 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 26.41 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 26.57 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 5 | 26.61 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 6 | 26.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 11 | 26.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 18 | 26.72 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 22 | 26.76 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 27 | 26.80 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 28 | 26.81 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 66 | 26.89 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 70 | 26.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 71 | 26.91 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 73 | 26.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 74 | 26.92 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 76 | 26.92 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 105 | 26.94 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 106 | 26.94 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 110 | 26.95 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 111 | 26.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 125 | 26.99 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 136 | 27.01 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 142 | 27.02 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 168 | 27.08 | wind | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 183 | 27.10 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 254 | 27.16 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 262 | 27.17 | humidity | 70.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 282 | 27.19 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 298 | 27.21 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 302 | 27.22 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 307 | 27.22 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 338 | 27.25 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 343 | 27.25 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 346 | 27.25 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 376 | 27.28 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 450 | 27.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 474 | 27.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 499 | 27.37 | radiation | 10.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 523 | 27.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 560 | 27.41 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 566 | 27.41 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 23 |
| 581 | 27.42 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 11 |
| 608 | 27.43 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 610 | 27.43 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 661 | 27.46 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 671 | 27.46 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 742 | 27.50 | radiation | 1.0 | 90 | < th | dose independent | rect. | 18 | 23 |
| 743 | 27.50 | radiation | 1.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 786 | 27.52 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 2 |
| 819 | 27.53 | humidity | 80.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 820 | 27.53 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 821 | 27.53 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 857 | 27.54 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 859 | 27.54 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 13 |
| 912 | 27.56 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 934 | 27.56 | radiation | 1.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 957 | 27.57 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 14 |