BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0802300 Os03g0802300|AK120564
         (681 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65540.1  | chr5:26195710-26198112 FORWARD LENGTH=606          275   8e-74

>AT5G65540.1 | chr5:26195710-26198112 FORWARD LENGTH=606
          Length = 605

 Score =  275 bits (702), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 234/436 (53%), Gaps = 47/436 (10%)

Query: 7   LLGEDGRGYDLARRLEACGAWRAWLGDXXXXXXXXXXXTPSTWDAXXXXXXXXXXXXXXX 66
           LLG+DGRG+DLAR+LE  G WR WLGD           +PSTW+A               
Sbjct: 3   LLGDDGRGFDLARKLEVSGVWRTWLGDSIYSSFHHYLSSPSTWEAFMRVDESKSRAQIQL 62

Query: 67  XXXXXXXXXXXXXXXDKASXXXXXXXXXXX---------------GLNSVNANYLQLHAD 111
                          DKA+                           ++ +N NYLQLH D
Sbjct: 63  QLRVRALLF------DKATVSLFLRSNTIAASSSSSASISDVSSVAVSKLNPNYLQLHGD 116

Query: 112 DIYFSLED-------EQEDINQHHMQ-----SRTSFSPSRENTM-----LSQRHNRYEEL 154
           D+Y++LE+       ++E   +H+       S+ SF+     +      LSQR +R+EEL
Sbjct: 117 DVYYTLENASLESGFQREGGIRHNPSLTKSLSKPSFTSGTRGSESDFSNLSQR-SRFEEL 175

Query: 155 PDTWYKQYAEKFRTWHGKFRSGDKDIPKRTSEGMSNYLKVCSVHKRKRAVFMDDQGHNIS 214
           PDTWY Q+  ++   +G    G ++  KRT EGMS YL+V   HKRKRA F++D+     
Sbjct: 176 PDTWYTQFISRYGFKYG-MSVGGQESDKRTPEGMSTYLRVVDTHKRKRAPFLEDRSL-AH 233

Query: 215 VPMSENGPSSKNAGDYSNLTDDTFIPEIRFPADCVPESAIPRTSETSRIYKIEVHGVLDN 274
           +  S   PSS   G  S   D  F+PE  F  +CVPE+A+   + T    K E +GVLD 
Sbjct: 234 MSRSSTHPSSGFDGSTSE-DDILFLPETMFRMNCVPETALSPITRTQDNLKTEFYGVLDT 292

Query: 275 LPAPVSRNTAMLERFGMMPEYYKKGNKYRGKDGSR-VEGKSLSQEQAMLMTRKLVARYLA 333
           LP   +R+  M+ER G+MPEY++   + RG   SR  E    S +QA L++RK+VAR L 
Sbjct: 293 LPQVTTRSHIMIERLGLMPEYHRM--EERGVLRSRKAEKMGFSDDQAALVSRKVVARMLL 350

Query: 334 NAGFESGTAVCIDVLSEIIIKHISKLGRNLKLLTDSYRKQFSSIELLKMFLQTVGYSNIG 393
             GFE  T V IDV S+++ +H+SKLGR LKLLTDSY+K+ S+++L+KMFL T GYSN+G
Sbjct: 351 TMGFEGATEVPIDVFSQLVSRHMSKLGRILKLLTDSYKKECSAMQLIKMFLNTTGYSNLG 410

Query: 394 PLMEITKTTNRGANYP 409
            L EI K   R  N+P
Sbjct: 411 SLAEIVKDGTR--NHP 424



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,688,633
Number of extensions: 400295
Number of successful extensions: 712
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 2
Length of query: 681
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 576
Effective length of database: 8,227,889
Effective search space: 4739264064
Effective search space used: 4739264064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)