BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0802300 Os03g0802300|AK120564
         (681 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0802300  Conserved hypothetical protein                      833   0.0  

>Os03g0802300 Conserved hypothetical protein
          Length = 681

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/500 (82%), Positives = 410/500 (82%)

Query: 1   MAAAQLLLGEDGRGYDLARRLEACGAWRAWLGDXXXXXXXXXXXTPSTWDAXXXXXXXXX 60
           MAAAQLLLGEDGRGYDLARRLEACGAWRAWLGD           TPSTWDA         
Sbjct: 1   MAAAQLLLGEDGRGYDLARRLEACGAWRAWLGDAAHAALAQHLQTPSTWDAFLFPSSGGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXDKASXXXXXXXXXXXGLNSVNANYLQLHADDIYFSLEDE 120
                                DKAS           GLNSVNANYLQLHADDIYFSLEDE
Sbjct: 61  SAAPPPRPLLLLQLRVRALLFDKASAALLPRAPPPAGLNSVNANYLQLHADDIYFSLEDE 120

Query: 121 QEDINQHHMQSRTSFSPSRENTMLSQRHNRYEELPDTWYKQYAEKFRTWHGKFRSGDKDI 180
           QEDINQHHMQSRTSFSPSRENTMLSQRHNRYEELPDTWYKQYAEKFRTWHGKFRSGDKDI
Sbjct: 121 QEDINQHHMQSRTSFSPSRENTMLSQRHNRYEELPDTWYKQYAEKFRTWHGKFRSGDKDI 180

Query: 181 PKRTSEGMSNYLKVCSVHKRKRAVFMDDQGHNISVPMSENGPSSKNAGDYSNLTDDTFIP 240
           PKRTSEGMSNYLKVCSVHKRKRAVFMDDQGHNISVPMSENGPSSKNAGDYSNLTDDTFIP
Sbjct: 181 PKRTSEGMSNYLKVCSVHKRKRAVFMDDQGHNISVPMSENGPSSKNAGDYSNLTDDTFIP 240

Query: 241 EIRFPADCVPESAIPRTSETSRIYKIEVHGVLDNLPAPVSRNTAMLERFGMMPEYYKKGN 300
           EIRFPADCVPESAIPRTSETSRIYKIEVHGVLDNLPAPVSRNTAMLERFGMMPEYYKKGN
Sbjct: 241 EIRFPADCVPESAIPRTSETSRIYKIEVHGVLDNLPAPVSRNTAMLERFGMMPEYYKKGN 300

Query: 301 KYRGKDGSRVEGKSLSQEQAMLMTRKLVARYLANAGFESGTAVCIDVLSEIIIKHISKLG 360
           KYRGKDGSRVEGKSLSQEQAMLMTRKLVARYLANAGFESGTAVCIDVLSEIIIKHISKLG
Sbjct: 301 KYRGKDGSRVEGKSLSQEQAMLMTRKLVARYLANAGFESGTAVCIDVLSEIIIKHISKLG 360

Query: 361 RNLKLLTDSYRKQFSSIELLKMFLQTVGYSNIGPLMEITKTTNRGANYPMQQDXXXXXXX 420
           RNLKLLTDSYRKQFSSIELLKMFLQTVGYSNIGPLMEITKTTNRGANYPMQQD       
Sbjct: 361 RNLKLLTDSYRKQFSSIELLKMFLQTVGYSNIGPLMEITKTTNRGANYPMQQDAQVQNQN 420

Query: 421 XXXXXXXXSRQFAPQMGINXXXXXXXXXXXXXXXXXXXXXXXASPRGPLTMADKNQAMVN 480
                   SRQFAPQMGIN                       ASPRGPLTMADKNQAMVN
Sbjct: 421 ALLHAQQLSRQFAPQMGINTQNLTPQQQQQLLQQQWLRRNQLASPRGPLTMADKNQAMVN 480

Query: 481 VKIENTVDSQIDSPYGSLTR 500
           VKIENTVDSQIDSPYGSLTR
Sbjct: 481 VKIENTVDSQIDSPYGSLTR 500




 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 77/101 (76%)

Query: 581 LAMSGGQNXXXXXXXXMSGGQNXXXXXXXXMSGGQNXXXXXXXXMSGGQNPQLAQQYKQM 640
           LAMSGGQN        MSGGQN        MSGGQN        MSGGQNPQLAQQYKQM
Sbjct: 581 LAMSGGQNAQLAQQLAMSGGQNAQLAQQLAMSGGQNAQLAQQLAMSGGQNPQLAQQYKQM 640

Query: 641 PSMSAYGMRMPPVKVEAFHELVSGDSSLKPDSDSNKLMSPK 681
           PSMSAYGMRMPPVKVEAFHELVSGDSSLKPDSDSNKLMSPK
Sbjct: 641 PSMSAYGMRMPPVKVEAFHELVSGDSSLKPDSDSNKLMSPK 681



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,852,677
Number of extensions: 617869
Number of successful extensions: 977
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 2
Length of query: 681
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 573
Effective length of database: 11,396,689
Effective search space: 6530302797
Effective search space used: 6530302797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)