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Os03g0792900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PVPR3 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0152) R2 : 0.0706
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.0321) R2dN8 : 0.0912 R2N8 : 0.0706
σ : 0.287
deviance : 37.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.3 0.25 12.6 -0.0464 0.0457 0.46 -0.599 3.07 0.158 22 0.9 1442 -- --
31.24 0.26 12.5 0.308 0.125 0.374 -0.563 -- 0.279 21.6 23.29 3789 -- --
28.37 0.248 12.6 -0.0263 0.135 0.54 -- 3.34 0.173 23.1 0.812 1365 -- --
32.45 0.265 12.5 0.306 0.108 0.372 -- -- 0.268 22.1 48.9 3788 -- --
29.2 0.252 12.6 -0.0157 -- 0.376 -- 2.86 0.177 -- 1.013 1395 -- --
33.38 0.271 12.6 0.316 0.0361 -- -0.576 -- 0.225 21.9 -- -- -- --
34.6 0.275 12.6 0.336 0.0515 -- -- -- 0.225 0.996 -- -- -- --
31.26 0.26 12.5 0.328 -- 0.316 -- -- 0.337 -- 16.98 20487 -- --
33.19 0.268 12.5 -- 0.0564 0.352 -- -- 0.312 24 83.72 20737 -- --
34.76 0.275 12.6 0.338 -- -- -- -- 0.226 -- -- -- -- --
37.58 0.287 12.6 -- 0.0572 -- -- -- 0.188 1.24 -- -- -- --
33.32 0.269 12.5 -- -- 0.355 -- -- 0.317 -- 106.9 20499 -- --
37.78 0.287 12.6 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.57 wind 1.0 43200 < th dose dependent rect. 2 7
3 27.67 wind 1.0 14400 < th dose independent rect. 2 4
7 27.87 wind 1.0 43200 < th dose independent rect. 2 2
10 27.98 precipitation 0.1 43200 < th dose independent rect. 13 5
11 27.98 precipitation 0.1 43200 < th dose dependent rect. 13 5
12 28.00 wind 1.0 14400 > th dose independent rect. 2 4
13 28.00 precipitation 0.1 43200 > th dose independent rect. 13 5
14 28.01 wind 1.0 43200 > th dose independent rect. 2 2
20 28.06 radiation 1.0 4320 > th dose independent rect. 18 1
30 28.06 wind 1.0 43200 < th dose dependent rect. 2 2
33 28.07 wind 1.0 43200 < th dose independent rect. 2 7
34 28.07 radiation 1.0 1440 < th dose dependent rect. 17 18
35 28.08 wind 1.0 43200 > th dose independent rect. 2 7
41 28.11 radiation 1.0 1440 < th dose dependent rect. 15 20
44 28.13 radiation 1.0 1440 < th dose dependent rect. 17 23
47 28.15 humidity 80.0 43200 < th dose dependent rect. 6 2
48 28.16 precipitation 0.1 43200 > th dose independent rect. 13 7
49 28.16 precipitation 0.1 43200 < th dose independent rect. 13 7
50 28.16 precipitation 0.1 43200 < th dose dependent rect. 13 7
61 28.20 temperature 20.0 43200 < th dose independent rect. 21 1
63 28.21 radiation 1.0 1440 < th dose dependent sin 11 NA
64 28.21 precipitation 0.1 43200 > th dose dependent rect. 13 6
65 28.21 radiation 1.0 4320 < th dose dependent rect. 18 8
78 28.23 radiation 1.0 1440 < th dose dependent sin 2 NA
81 28.24 temperature 20.0 43200 > th dose independent rect. 21 1
103 28.26 radiation 1.0 4320 < th dose dependent rect. 18 1
110 28.27 radiation 1.0 4320 < th dose independent rect. 18 1
122 28.28 radiation 1.0 4320 < th dose independent rect. 18 7
141 28.30 radiation 1.0 1440 < th dose dependent no NA NA
142 28.30 radiation 1.0 1440 < th dose dependent rect. 3 16
144 28.30 radiation 1.0 1440 < th dose dependent rect. 24 19
149 28.30 radiation 1.0 1440 < th dose dependent rect. 3 22
165 28.31 radiation 1.0 1440 < th dose dependent rect. 5 14
203 28.32 humidity 90.0 14400 > th dose dependent rect. 1 9
246 28.39 radiation 1.0 1440 < th dose dependent rect. 5 12
259 28.41 radiation 1.0 1440 < th dose independent rect. 17 23
267 28.42 humidity 90.0 14400 > th dose dependent rect. 20 10
268 28.42 humidity 90.0 14400 > th dose dependent rect. 21 13
277 28.42 radiation 1.0 1440 < th dose dependent rect. 7 23
300 28.45 radiation 1.0 1440 > th dose independent rect. 17 23
301 28.45 precipitation 0.1 43200 > th dose dependent rect. 15 2
327 28.48 humidity 90.0 14400 > th dose dependent sin 8 NA
363 28.50 humidity 90.0 14400 > th dose dependent rect. 20 8
374 28.51 radiation 1.0 1440 < th dose independent rect. 17 21
424 28.55 temperature 25.0 43200 < th dose dependent rect. 10 1
435 28.56 radiation 1.0 1440 < th dose independent rect. 15 20
443 28.57 radiation 1.0 1440 > th dose independent rect. 15 20
453 28.58 radiation 1.0 1440 < th dose independent rect. 17 18
455 28.58 radiation 1.0 1440 > th dose independent rect. 17 21
462 28.58 precipitation 0.1 43200 > th dose dependent rect. 13 13
474 28.59 temperature 30.0 14400 < th dose dependent rect. 7 1
475 28.59 temperature 10.0 14400 > th dose dependent rect. 7 2
566 28.64 humidity 90.0 14400 > th dose independent rect. 20 10
609 28.66 radiation 1.0 1440 > th dose independent rect. 17 18
615 28.66 precipitation 0.1 43200 > th dose dependent sin 18 NA
627 28.67 radiation 1.0 1440 < th dose independent sin 2 NA
664 28.69 temperature 20.0 43200 > th dose independent sin 18 NA
665 28.69 radiation 1.0 1440 > th dose independent sin 2 NA
681 28.70 radiation 1.0 1440 < th dose independent no NA NA
689 28.70 radiation 1.0 1440 < th dose independent rect. 3 16
691 28.70 radiation 1.0 1440 < th dose independent rect. 24 19
694 28.70 radiation 1.0 1440 < th dose independent rect. 4 21
721 28.71 radiation 1.0 1440 > th dose independent no NA NA
734 28.71 radiation 1.0 1440 > th dose independent rect. 5 14
735 28.71 radiation 1.0 1440 < th dose independent rect. 5 14
834 28.71 radiation 1.0 1440 < th dose dependent rect. 5 9
859 28.72 wind 3.0 43200 > th dose dependent rect. 7 1
914 28.74 radiation 1.0 1440 < th dose independent sin 12 NA
963 28.76 humidity 90.0 14400 > th dose independent rect. 5 1
975 28.76 humidity 80.0 43200 > th dose dependent rect. 12 1