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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0788600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.074) R2 : 0.483
β1 : -4.94 (0.272) R2dD : 0.393 R2D : 0.263
β2 : 0.645 (0.181) R2dC : 0.0152 R2C : -0.023
β3 : 2.12 (0.22) R2dE : 0.112 R2E : 0.0419
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.28 (0.158) R2dN8 : 0.1 R2N8 : 0.0236
σ : 1.38
deviance : 879.6
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_____
C
peak time of C : 10.6
E
wheather : humidity
threshold : 69.64
memory length : 1143
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.37
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
876.74 1.39 5.8 -4.94 0.458 1.96 2.17 0.165 -1.18 7.47 68.99 1242 7.26 --
876.77 1.38 5.8 -4.95 0.464 1.97 2.16 -- -1.18 7.49 68.86 1236 7.3 --
879.63 1.38 5.83 -4.97 0.643 2.13 -- -0.143 -1.29 10.6 69.56 1146 7.37 --
879.6 1.38 5.82 -4.94 0.645 2.12 -- -- -1.28 10.6 69.64 1143 7.37 --
899.08 1.4 5.83 -4.91 -- 2.01 -- 0.0819 -1.27 -- 69.22 1198 7.01 --
1020.12 1.5 5.84 -4.74 0.618 -- 3 -- -1.36 5.99 -- -- -- --
1041.75 1.51 5.84 -4.71 0.64 -- -- -- -1.37 6.52 -- -- -- --
899.07 1.4 5.84 -4.93 -- 2.01 -- -- -1.27 -- 69.2 1197 7.01 --
1498.72 1.8 5.82 -- 0.735 2.17 -- -- -1.24 10.5 71.03 2475 7.73 --
1063.07 1.52 5.86 -4.7 -- -- -- -- -1.36 -- -- -- -- --
1627.29 1.89 5.73 -- 0.583 -- -- -- -0.845 6.98 -- -- -- --
1052.61 1.51 5.84 -- -- 5.24 -- -- -1.07 -- 67 30068 6.33 --
1645.17 1.89 5.74 -- -- -- -- -- -0.835 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 885.81 radiation 20 1440 > th dose independent rect. 16 15
2 887.12 humidity 80 1440 < th dose dependent rect. 16 5
4 887.27 humidity 70 1440 < th dose independent rect. 18 1
6 888.29 humidity 70 1440 < th dose independent rect. 18 13
22 889.52 radiation 20 1440 > th dose independent rect. 16 1
36 889.54 radiation 20 1440 > th dose dependent rect. 16 15
49 890.01 radiation 20 1440 < th dose independent rect. 16 1
51 890.28 humidity 70 720 > th dose independent rect. 18 9
52 890.65 radiation 20 1440 < th dose independent rect. 16 13
59 891.15 humidity 70 1440 > th dose independent rect. 18 13
63 891.65 radiation 20 1440 < th dose independent rect. 16 4
65 891.73 radiation 20 1440 < th dose independent rect. 16 8
67 891.81 radiation 20 1440 < th dose independent rect. 16 6
69 891.82 humidity 80 1440 < th dose dependent rect. 16 16
70 891.84 humidity 70 1440 < th dose dependent rect. 16 1
74 892.02 humidity 70 1440 > th dose independent rect. 18 11
80 892.30 radiation 20 1440 > th dose dependent rect. 16 1
94 892.31 humidity 70 1440 > th dose independent rect. 18 7
100 892.49 humidity 70 1440 > th dose independent rect. 18 2
101 892.55 humidity 70 1440 > th dose independent rect. 18 4
108 893.02 humidity 70 1440 < th dose independent sin 12 NA
117 893.71 radiation 40 1440 < th dose dependent rect. 16 1
119 893.79 temperature 30 1440 > th dose dependent rect. 18 15
146 895.49 humidity 80 1440 < th dose dependent sin 14 NA
178 896.58 temperature 30 1440 > th dose dependent rect. 18 1
236 898.58 humidity 70 1440 > th dose independent sin 12 NA
249 898.66 atmosphere 995 43200 < th dose dependent rect. 14 12
262 899.38 radiation 10 1440 > th dose independent sin 14 NA
270 899.69 radiation 40 1440 < th dose dependent rect. 16 12
289 900.29 radiation 40 1440 < th dose dependent rect. 16 9
298 900.63 wind 1 270 < th dose dependent rect. 4 1
326 901.12 radiation 40 1440 < th dose dependent rect. 16 6
344 901.43 wind 1 270 < th dose independent rect. 4 1
407 903.53 humidity 70 1440 > th dose independent rect. 16 15
434 903.92 humidity 70 1440 > th dose independent rect. 16 12
439 903.99 humidity 70 1440 > th dose independent rect. 16 9
449 904.09 humidity 70 1440 > th dose independent rect. 16 4
450 904.10 radiation 10 1440 < th dose dependent rect. 11 19
462 904.17 radiation 10 1440 > th dose independent rect. 11 21
520 904.82 radiation 10 1440 < th dose dependent sin 15 NA
535 905.26 humidity 70 720 > th dose dependent rect. 19 2
570 906.05 radiation 10 1440 < th dose dependent rect. 11 7
592 906.25 temperature 25 720 > th dose dependent rect. 21 2
593 906.26 atmosphere 995 43200 > th dose independent rect. 16 18
619 906.57 radiation 10 1440 < th dose dependent rect. 11 14
645 906.67 atmosphere 995 43200 < th dose independent sin 12 NA
649 906.73 atmosphere 995 43200 > th dose independent sin 12 NA
651 906.74 atmosphere 995 43200 < th dose independent rect. 16 18
660 906.84 radiation 10 1440 < th dose dependent rect. 11 11
724 907.86 atmosphere 995 43200 > th dose independent rect. 17 16
759 908.45 atmosphere 995 43200 < th dose independent rect. 17 16
839 909.44 humidity 80 1440 < th dose dependent rect. 6 16
874 909.76 radiation 10 1440 > th dose independent rect. 15 22