Os03g0786900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0786900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.53 | 0.228 | 10.9 | 0.0726 | 0.368 | 0.514 | -0.227 | -0.158 | 0.17 | 1.34 | 20.5 | 1263 | -- | -- |
| 23.59 | 0.226 | 10.9 | 0.0939 | 0.372 | 0.534 | -0.261 | -- | 0.168 | 1.27 | 20.5 | 1276 | -- | -- |
| 23.71 | 0.227 | 10.9 | 0.0733 | 0.367 | 0.511 | -- | -0.186 | 0.168 | 1.22 | 20.5 | 1233 | -- | -- |
| 23.81 | 0.227 | 10.9 | 0.107 | 0.362 | 0.536 | -- | -- | 0.175 | 1.2 | 20.52 | 1234 | -- | -- |
| 31.11 | 0.26 | 10.9 | 0.0603 | -- | 0.566 | -- | -0.231 | 0.162 | -- | 20.51 | 1065 | -- | -- |
| 30.28 | 0.258 | 10.9 | 0.319 | 0.405 | -- | -0.304 | -- | 0.297 | 1.42 | -- | -- | -- | -- |
| 30.63 | 0.259 | 10.9 | 0.33 | 0.404 | -- | -- | -- | 0.299 | 1.22 | -- | -- | -- | -- |
| 31.25 | 0.26 | 10.9 | 0.106 | -- | 0.587 | -- | -- | 0.173 | -- | 20.5 | 1069 | -- | -- |
| 24.07 | 0.229 | 10.9 | -- | 0.369 | 0.584 | -- | -- | 0.157 | 1.19 | 20.57 | 1276 | -- | -- |
| 40.73 | 0.298 | 10.9 | 0.345 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 33.5 | 0.271 | 10.9 | -- | 0.41 | -- | -- | -- | 0.262 | 1.25 | -- | -- | -- | -- |
| 31.49 | 0.261 | 10.9 | -- | -- | 0.63 | -- | -- | 0.153 | -- | 20.53 | 1069 | -- | -- |
| 43.87 | 0.309 | 10.9 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 2 | 23.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 3 | 23.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 33 | 23.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 40 | 23.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 44 | 23.32 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 53 | 23.35 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 333 | 23.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 378 | 23.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 383 | 23.81 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 412 | 23.85 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 424 | 23.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 426 | 23.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 438 | 23.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 440 | 23.89 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 452 | 23.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 464 | 23.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 472 | 23.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 478 | 23.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 479 | 23.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 528 | 23.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 530 | 23.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 591 | 24.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 615 | 24.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 660 | 24.09 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |