BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0786900 Os03g0786900|AK121531
         (1259 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0786900  Tetratricopeptide-like helical domain containi...  2593   0.0  
AK107656                                                          217   5e-56

>Os03g0786900 Tetratricopeptide-like helical domain containing protein
          Length = 1259

 Score = 2593 bits (6721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1244/1259 (98%), Positives = 1244/1259 (98%)

Query: 1    MVLTTPLAEAACRKSGLSVVDMLSPFSLFKKIDVPVRTASDQPYRLQMFKIRMVYASDVR 60
            MVLTTPLAEAACRKSGLSVVDMLSPFSLFKKIDVPVRTASDQPYRLQMFKIRMVYASDVR
Sbjct: 1    MVLTTPLAEAACRKSGLSVVDMLSPFSLFKKIDVPVRTASDQPYRLQMFKIRMVYASDVR 60

Query: 61   KQDYEVADQRIKPVVSEANESALPDLLSDPPQLEDVLSKPEAELCPLWIKKFNRALMRTL 120
            KQDYEVADQRIKPVVSEANESALPDLLSDPPQLEDVLSKPEAELCPLWIKKFNRALMRTL
Sbjct: 61   KQDYEVADQRIKPVVSEANESALPDLLSDPPQLEDVLSKPEAELCPLWIKKFNRALMRTL 120

Query: 121  SFSEHETFDHPVACLLVVSSKDNEPISKFVDLFNTNQLPSLLNEGIMDPQILKHYLILHD 180
            SFSEHETFDHPVACLLVVSSKDNEPISKFVDLFNTNQLPSLLNEGIMDPQILKHYLILHD
Sbjct: 121  SFSEHETFDHPVACLLVVSSKDNEPISKFVDLFNTNQLPSLLNEGIMDPQILKHYLILHD 180

Query: 181  QQDGPQEIAMNILAEMKSTLGLNDCKLLCINSSTEADGADAENSWLPYKSHGLHNQDGAC 240
            QQDGPQEIAMNILAEMKSTLGLNDCKLLCINSSTEADGADAENSWLPYKSHGLHNQDGAC
Sbjct: 181  QQDGPQEIAMNILAEMKSTLGLNDCKLLCINSSTEADGADAENSWLPYKSHGLHNQDGAC 240

Query: 241  WLNTDDLNEIKDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQIKNLWWRKRDDVP 300
            WLNTDDLNEIKDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQIKNLWWRKRDDVP
Sbjct: 241  WLNTDDLNEIKDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQIKNLWWRKRDDVP 300

Query: 301  EAANGPMYTFTSIESQIRVLGDYAFMLRDYELALSNYRLLSTDYKLDKAWKRFAGVQEMS 360
            EAANGPMYTFTSIESQIRVLGDYAFMLRDYELALSNYRLLSTDYKLDKAWKRFAGVQEMS
Sbjct: 301  EAANGPMYTFTSIESQIRVLGDYAFMLRDYELALSNYRLLSTDYKLDKAWKRFAGVQEMS 360

Query: 361  GLCYFMLDQSRKDAEYCLDSAFSTYLRIGSSGKRNATRCGIWWAEMLKTRGQYREASSVY 420
            GLCYFMLDQSRKDAEYCLDSAFSTYLRIGSSGKRNATRCGIWWAEMLKTRGQYREASSVY
Sbjct: 361  GLCYFMLDQSRKDAEYCLDSAFSTYLRIGSSGKRNATRCGIWWAEMLKTRGQYREASSVY 420

Query: 421  YRVSNEEPSLHSAVLLEQAACCYVLSKPPMLRKYGFHLVLAGNSYYISDQKQHAVRAYRN 480
            YRVSNEEPSLHSAVLLEQAACCYVLSKPPMLRKYGFHLVLAGNSYYISDQKQHAVRAYRN
Sbjct: 421  YRVSNEEPSLHSAVLLEQAACCYVLSKPPMLRKYGFHLVLAGNSYYISDQKQHAVRAYRN 480

Query: 481  ALFVYKQHPWSYINDHVHFNVGRWYGVLGIFDVAIKHLLEVIACSHQSLTTQSMFLNDFF 540
            ALFVYKQHPWSYINDHVHFNVGRWYGVLGIFDVAIKHLLEVIACSHQSLTTQSMFLNDFF
Sbjct: 481  ALFVYKQHPWSYINDHVHFNVGRWYGVLGIFDVAIKHLLEVIACSHQSLTTQSMFLNDFF 540

Query: 541  HFVQSMGKKFDVYKLQLPVINMPSLRVIYEDHRTYASDADVNVSESIWQELEEEMIPSSS 600
            HFVQSMGKKFDVYKLQLPVINMPSLRVIYEDHRTYASDADVNVSESIWQELEEEMIPSSS
Sbjct: 541  HFVQSMGKKFDVYKLQLPVINMPSLRVIYEDHRTYASDADVNVSESIWQELEEEMIPSSS 600

Query: 601  IVRTNWLEKSPDLRKYKDSCVCVVGEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDAS 660
            IVRTNWLEKSPDLRKYKDSCVCVVGEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDAS
Sbjct: 601  IVRTNWLEKSPDLRKYKDSCVCVVGEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDAS 660

Query: 661  SAVNSVLTTGAGEDIANTKPAISTFEDDGNNFTVSKLDIVLGGSETKSVQLEVTPKVEGI 720
            SAVNSVLTTGAGEDIANTKPAISTFEDDGNNFTVSKLDIVLGGSETKSVQLEVTPKVEGI
Sbjct: 661  SAVNSVLTTGAGEDIANTKPAISTFEDDGNNFTVSKLDIVLGGSETKSVQLEVTPKVEGI 720

Query: 721  LKLHGIRWTLSDLLVGYQYFEFDXXXXXXXXXXXXXXXLSNTLIVIKGLPKLTGCIDHLP 780
            LKLHGIRWTLSDLLVGYQYFEFD               LSNTLIVIKGLPKLTGCIDHLP
Sbjct: 721  LKLHGIRWTLSDLLVGYQYFEFDTKRKTKKGKKGPRRTLSNTLIVIKGLPKLTGCIDHLP 780

Query: 781  TNAFAGDLRLLKLNLRNQSEYAVKNIKMKLSHPRFVIPGDLSEVDFEFPQCLRKHVQSEI 840
            TNAFAGDLRLLKLNLRNQSEYAVKNIKMKLSHPRFVIPGDLSEVDFEFPQCLRKHVQSEI
Sbjct: 781  TNAFAGDLRLLKLNLRNQSEYAVKNIKMKLSHPRFVIPGDLSEVDFEFPQCLRKHVQSEI 840

Query: 841  STVSTKRTQGDAKGLLFTFSQDIKIQEGATFSWPIWFHAATPGNFSLYISLYYEMESPSE 900
            STVSTKRTQGDAKGLLFTFSQDIKIQEGATFSWPIWFHAATPGNFSLYISLYYEMESPSE
Sbjct: 841  STVSTKRTQGDAKGLLFTFSQDIKIQEGATFSWPIWFHAATPGNFSLYISLYYEMESPSE 900

Query: 901  ITYRTLRMHYNIEVFPSLNVSFAIRMCSSRLKEYIVRMDILNRTPSESFILHQLSCNDSK 960
            ITYRTLRMHYNIEVFPSLNVSFAIRMCSSRLKEYIVRMDILNRTPSESFILHQLSCNDSK
Sbjct: 901  ITYRTLRMHYNIEVFPSLNVSFAIRMCSSRLKEYIVRMDILNRTPSESFILHQLSCNDSK 960

Query: 961  WAISSLPLCDSIRSIETVSANQSVSCFFKIKDLGTNSCKEAENSSCRSDMLFLSREGNSN 1020
            WAISSLPLCDSIRSIETVSANQSVSCFFKIKDLGTNSCKEAENSSCRSDMLFLSREGNSN
Sbjct: 961  WAISSLPLCDSIRSIETVSANQSVSCFFKIKDLGTNSCKEAENSSCRSDMLFLSREGNSN 1020

Query: 1021 TEEFDVSQSPITNFHYQERYQQGRLAKGPRDLLDFILISKAVGGNYSKSDPDVQLLSHHV 1080
            TEEFDVSQSPITNFHYQERYQQGRLAKGPRDLLDFILISKAVGGNYSKSDPDVQLLSHHV
Sbjct: 1021 TEEFDVSQSPITNFHYQERYQQGRLAKGPRDLLDFILISKAVGGNYSKSDPDVQLLSHHV 1080

Query: 1081 CHCSAIDQSPIWWFMEGPRTVTHDFSKSYCEANIQLVIHNTVQHNISARVVTYDSVPDKS 1140
            CHCSAIDQSPIWWFMEGPRTVTHDFSKSYCEANIQLVIHNTVQHNISARVVTYDSVPDKS
Sbjct: 1081 CHCSAIDQSPIWWFMEGPRTVTHDFSKSYCEANIQLVIHNTVQHNISARVVTYDSVPDKS 1140

Query: 1141 QTVNLQDSNSNQGGWYDVSLENDIKAISTAKGTHYQKQPSESISPFVWCSLSSAQVDLKP 1200
            QTVNLQDSNSNQGGWYDVSLENDIKAISTAKGTHYQKQPSESISPFVWCSLSSAQVDLKP
Sbjct: 1141 QTVNLQDSNSNQGGWYDVSLENDIKAISTAKGTHYQKQPSESISPFVWCSLSSAQVDLKP 1200

Query: 1201 DTSTKVPLKVCIFMPGTYNLSNYQLQWKVHSSEVGQVDENQRSGGGQGHPFYVTVLQDA 1259
            DTSTKVPLKVCIFMPGTYNLSNYQLQWKVHSSEVGQVDENQRSGGGQGHPFYVTVLQDA
Sbjct: 1201 DTSTKVPLKVCIFMPGTYNLSNYQLQWKVHSSEVGQVDENQRSGGGQGHPFYVTVLQDA 1259



>AK107656 
          Length = 1333

 Score =  217 bits (552), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 206/804 (25%), Positives = 340/804 (42%), Gaps = 114/804 (14%)

Query: 93  LEDVLSKPE----AELCPLWIKKFNRALMRTLSFSEHETFDHPVACLLVVSSKDNEPISK 148
           LE+ L+K +     E  P W     + +       +HETF HPVA LL VSS   +P++ 
Sbjct: 137 LEETLAKLQRGSLEETTP-WFAAVQQLVFSQRPVCKHETFGHPVAVLLAVSSASPDPMND 195

Query: 149 FVDLFN-TNQLPSLLNEGIMDPQILKHYLILHD-QQDGPQ-EIAMNILAEMKSTLGLNDC 205
           F  L+  T+Q      +  ++  +LK+Y+++HD +  GP    +  +L ++K T GL+ C
Sbjct: 196 FAKLYEVTSQASPFAAQPFINTDVLKYYVLIHDVRTSGPDLSSSKEMLEQIKKTYGLH-C 254

Query: 206 KLLCINSSTE---ADGADAENSWLPYKS------------HGLHNQDGACWLNTDDLNEI 250
            LL INS+ +   A  A     W PY S                  + A  L+ +D+  I
Sbjct: 255 CLLAINSAPDDRPAAPAKLAALWSPYLSTLPTSPNPMSPPGDPTRANLAAVLDEEDVKRI 314

Query: 251 KDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQI----KNLWWRKRDDVPEA---- 302
           K F+++L +  I+P+ME+ ++ + + +A +R+G  N++    + L+              
Sbjct: 315 KGFIRELTAQSIVPFMERYVQHMGEHLANSRRGLTNRLFGASRKLYGGVGVGGSSDKSGS 374

Query: 303 ---------------ANGPMYTFTSIESQIRVLGDYAFMLRDYELALSNYRLLSTDYKLD 347
                          A    Y +TSIE+Q R L D+AF +RDY+LA S Y L   D+  D
Sbjct: 375 GSSTPGGLATSGGYDAQNEWYPYTSIEAQTRRLADFAFTIRDYKLAASMYDLGRKDFAGD 434

Query: 348 KAWKRFAGVQEMSGLCYFMLDQSRKDAEYCLDSAFSTY-----LRIGSSG-----KRNAT 397
           KA +  A   EM GL + M+  + + A   +DS  +       LR  +       + NA 
Sbjct: 435 KAHRHSAAATEMFGLSHLMIMYTARSAPIDVDSYLAQACQEYTLRSAARAAPAMDENNAL 494

Query: 398 RCGIWWAEMLKTRGQYREASSVYYRVSNEEPSLHSAVLLEQAA-CCYVLSKPPMLRKYGF 456
           R  + + E  +  G  R A +   R+S     + + +LLEQAA  C  L     LRKY  
Sbjct: 495 RATLLYYEAYRMLGYLRPAPAGLLRMSQRSDEVLAPLLLEQAALACLQLRPRAALRKYAL 554

Query: 457 HLVLAGNSYYISDQKQHAVRAYRNALFVYKQHPWSYINDHVHFNVGRWYGVLGIFDVAIK 516
           HLV+A + Y    QK  ++R Y NA  VY+   W+ + +H+   +G      G  D A+ 
Sbjct: 555 HLVMAAHKYQACGQKALSLRCYANAAVVYRDKGWTLVENHIEHELGMQAYNDGDSDTALA 614

Query: 517 HLLEVIACSHQSLTTQSMFLNDF---FHFVQSMGKKFD------VYKLQLPV----INMP 563
           HL+ ++  S  S      FL      + +    G++ D         L LPV        
Sbjct: 615 HLVRLVRSSANSSVEHDTFLKAVQTAYKYSARAGEQPDSIPGAAATALALPVPMFDAASA 674

Query: 564 SLRVIYEDHRTYASDADVNVSESIWQELEEEMIPSSSIVRTNWLEKSPDLRKYKDSCVCV 623
           SLR + E     ++ A   V E +W+ LEE+++ S    RT+  + S   RK   S    
Sbjct: 675 SLRFVPES----SASATSAVDEEVWERLEEQLVASGLGERTH-ADGSKSRRKRPTSETST 729

Query: 624 ------VGEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDASSAVNSVLTTGAGEDIAN 677
                 VG+   + I L NPL + + V  I  + +  T                 +D ++
Sbjct: 730 QAREVPVGQTFWLEIALHNPLGVELAVDHIHPVLKHDTREQ--------------DDFSD 775

Query: 678 TKPAISTFEDDGNNFTVSKLDIVLGGSETKSVQLEVTPKVEG-ILKLHGIRWTLSDLLVG 736
            +      ED G         +VLG  E + + + +    E   L++  + + L+D +  
Sbjct: 776 VE-----TEDPGR--------MVLGAFEHRRISVAMRANKEAKALRVASVTFRLADAIGL 822

Query: 737 YQYF----EFDXXXXXXXXXXXXXXXLSNTLIVIKGLPKLTGCIDHLPTNAFAGDLRLLK 792
            Q      +                 LS  + V    P LT  I + P +   G+   LK
Sbjct: 823 VQPLVKKGQRLNATKEQRAAVVYGRELSLAVSVHAARPTLTARIVYAPAHMLLGEQARLK 882

Query: 793 LNLRNQSEYAVKNIKMKLSHPRFV 816
           +  +N+    +++++     P   
Sbjct: 883 VVFKNEGGAPIEDVRALCDQPELA 906



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 41,361,252
Number of extensions: 1675555
Number of successful extensions: 3381
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 3
Length of query: 1259
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1147
Effective length of database: 11,187,833
Effective search space: 12832444451
Effective search space used: 12832444451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 162 (67.0 bits)