BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0786900 Os03g0786900|AK121531
         (1259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16280.1  | chr5:5323377-5331345 REVERSE LENGTH=1273          1220   0.0  

>AT5G16280.1 | chr5:5323377-5331345 REVERSE LENGTH=1273
          Length = 1272

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1273 (48%), Positives = 852/1273 (66%), Gaps = 40/1273 (3%)

Query: 1    MVLTTPLAEAACRKSGLSVVDMLSPFSLFKKIDVPVRTASDQPYRLQMFKIRMVYASDVR 60
            MVL TPL E    ++GLS V+ L PF  F  IDVPVRT+SDQ YRL+ F +R+ YASD++
Sbjct: 22   MVLCTPLVEDTFLRNGLSFVETLKPFCNFSNIDVPVRTSSDQLYRLKKFTLRLFYASDIK 81

Query: 61   KQDYEVADQRIKPVVSEANESALPDLLSDPPQLEDVLSKPEAELCPLWIKKFNRALMRTL 120
            + + EVA QR++ V+++A E    DL SDPPQ+ D+LS PE+E+ P W + +N+ L+RTL
Sbjct: 82   QPNVEVAKQRLERVITQAGEKDFQDLKSDPPQITDILSNPESEIAPSWFRYYNKELIRTL 141

Query: 121  SFSEHETFDHPVACLLVVSSKDNEPISKFVDLFNTNQLPSLLNEGIMDPQILKHYLILHD 180
            SFS+HE FDHPVACLLVVSSKD EPI KFVDLFN+N+LP+   +G MDP ILKHYL++HD
Sbjct: 142  SFSDHEAFDHPVACLLVVSSKDEEPIKKFVDLFNSNRLPT---DGTMDPNILKHYLLVHD 198

Query: 181  QQDGPQEIAMNILAEMKSTLGLNDCKLLCINSSTEADGADAENSWLPYKSHGLHNQDGAC 240
             QD   E    +L+EM+S  G N+C LLC NSS E +     N W  +KS    ++ G C
Sbjct: 199  NQDATTERTSKVLSEMRSQFGNNECNLLCTNSSKEGNVEHQANPWASFKSSVSADKLG-C 257

Query: 241  WLNTDDLNEIKDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQIKNLWWRK-RDDV 299
             L  DD+ EIKD MQ+ AS HIIPYMEQK+R LNQQ++ TRKG +NQ KN  WRK +DD 
Sbjct: 258  ALTGDDIVEIKDLMQEFASRHIIPYMEQKVRELNQQISATRKGLKNQFKNFLWRKGKDDN 317

Query: 300  PEAANGPMYTFTSIESQIRVLGDYAFMLRDYELALSNYRLLSTDYKLDKAWKRFAGVQEM 359
            P+A  G MYT++S ESQIR+LGDYAFML DYELALS+YRL+ TDY +DKAWK +AGVQEM
Sbjct: 318  PDATKGSMYTYSSTESQIRILGDYAFMLHDYELALSSYRLIYTDYNIDKAWKHYAGVQEM 377

Query: 360  SGLCYFMLDQSRKDAEYCLDSAFSTYLRIGSSGKRNATRCGIWWAEMLKTRGQYREASSV 419
             GL YF+ DQ +KD+E C+++AFSTY+++G SG +NATRCG+WWAEMLK R Q++EA+SV
Sbjct: 378  RGLAYFISDQPKKDSE-CMENAFSTYMKLGKSGFQNATRCGLWWAEMLKARDQHKEAASV 436

Query: 420  YYRVSNEEPSLHSAVLLEQAACCYVLSKPPMLRKYGFHLVLAGNSYYISDQKQHAVRAYR 479
            Y+R+  EEP LH+AV+LEQA+ C++L+KP ML KYGFHLVL+G+ Y   +Q  HA+R Y+
Sbjct: 437  YFRICGEEP-LHAAVMLEQASYCFMLTKPAMLHKYGFHLVLSGDHYKNCNQVNHAIRTYK 495

Query: 480  NALFVYKQHPWSYINDHVHFNVGRWYGVLGIFDVAIKHLLEVIACSHQSLTTQSMFLNDF 539
            +A+ VYK   WS+I DH++F++G+WY ++G+ DVA++++L+V+ C +QS  TQ +FL DF
Sbjct: 496  SAISVYKSTTWSHIKDHLYFHIGQWYAIVGMHDVAVRNMLKVLDCGYQSKATQEIFLRDF 555

Query: 540  FHFVQSMGKKFDVYKLQLPVINMPSLRVIYEDHRTYASDADVNVSESIWQELEEEMIPSS 599
            F  V+  G K +V  LQLP++NM SL+VIYEDHRTYAS A   V ESIWQ LE+++IPS 
Sbjct: 556  FDIVKKTGMKHEVVGLQLPILNMSSLQVIYEDHRTYASQASALVEESIWQSLEDDIIPSL 615

Query: 600  SIVRTNWLEKSPDL--RKYKDSCVCVVGEAVKVRIELRNPLQIPVVVSCISLICQLSTSL 657
            +  ++NWLE    L  +KYK+S VCV GE+VK+ +E RNPL I   ++ +SLIC+L+ + 
Sbjct: 616  NSGKSNWLELQSKLLPKKYKESNVCVAGESVKLDLEFRNPLLISTSITSVSLICELTANS 675

Query: 658  DASSAV-NSVLTTGAGEDIANTKPAISTFEDDGNNFTVSKLDIVLGGSETKSVQLEVTPK 716
            D    V N    +    +I+     ++T     ++FT+S++D  LGG E K V+L VTP 
Sbjct: 676  DDLKLVDNEPSGSSLSPEISTEHNQVTT--SGFSSFTLSEVDFTLGGGEKKLVRLTVTPS 733

Query: 717  VEGILKLHGIRWTLSDLLVGYQYFEFDXXXXXXXXXXXXXXXLSNT----LIVIKGLPKL 772
             EGILK+ G+RW LS  +VG  YF+                 L+ T     +VIK LP+L
Sbjct: 734  EEGILKIVGVRWELSGSIVGVHYFQ-SVSVKAKTARGRRKNKLTPTDALKFLVIKSLPRL 792

Query: 773  TGCIDHLPTNAFAGDLRLLKLNLRNQSEYAVKNIKMKLSHPRFVIPGDL-SEVDFEFPQC 831
             G IDHLP   +AGDLR L L LRN+SE   KN+KMK+SHPRFV PG+   E+  EFP C
Sbjct: 793  EGSIDHLPEKLYAGDLRYLVLELRNKSESPTKNLKMKISHPRFVSPGNHEEELTTEFPDC 852

Query: 832  LRKHVQSEISTVSTKRTQGDAKGLLFTFSQDIKIQEGATFSWPIWFHAATPGNFSLYISL 891
            L+K  +  I    + RT       +F F +D+ +Q   +  WP+W  AA PG  SLY ++
Sbjct: 853  LKKGDEHNIVQRESNRTSS-----VFAFPKDVSLQGDRSLRWPLWLRAAIPGTISLYFTI 907

Query: 892  YYEMESPSEITYRTLRMHYNIEVFPSLNVSFAIRMCSSRLKEYIVRMDILNRTPSESFIL 951
            YYEME+ S + YRTLRMHYN++V PSL  SF +    SRL+E++VRMDI+NR  S+ F +
Sbjct: 908  YYEMENVSSMKYRTLRMHYNLQVLPSLQTSFKVTPSPSRLQEFLVRMDIVNRAKSDCFQI 967

Query: 952  HQLSCNDSKWAISSLPLCDSIRSIETVSANQSVSCFFKIKDLGTNSCKEAENSS---CRS 1008
            HQLS    +W IS L   D+I   + + A Q++SCFF IKD   +  ++ E +S    ++
Sbjct: 968  HQLSTVGCRWGISLLQPVDTILPSKFLLAGQALSCFFMIKDCRKSGTEDEETTSLPPSQT 1027

Query: 1009 DMLFLSREGNSNTEEFDVSQSPITNFHYQERYQQGRLAKGPRDLLDFILISKAVGGNYSK 1068
            D+   +++ +     FD+  SP+ +FH  ER  QG   +   + +DFILIS+    +   
Sbjct: 1028 DVKLYTQDDDEKL--FDIVSSPLASFHESERSCQGPSVQVSPNTVDFILISRLAKSSSPS 1085

Query: 1069 SDPDV-QLLSHHVCHCSAIDQSPIWWFMEGPRTVTHDFSKSYCEANIQLVIHNTVQHNIS 1127
            + PD+ ++LSHH CH S    SPI W ++GP+T+ HDFS S CE  +++VI NT     S
Sbjct: 1086 AVPDLPKILSHHSCHNSIRSSSPISWSLDGPQTIHHDFSTSLCEIKLKMVIRNTSDGISS 1145

Query: 1128 ARVVTYDSVPDKSQTVNLQDSNSNQGGW-YDVSLENDIKAISTAKGTHYQK--QPSESIS 1184
              + T D +PD + T +   S+ NQ GW Y  ++  ++K  S   G+   K     ES  
Sbjct: 1146 VTINTNDFLPDAAATTS---SSGNQSGWRYVPTITEEMKLTSDVMGSRLGKPPSSMESSP 1202

Query: 1185 PFVWCSLSSAQVDLKPDTSTKVPLKVCIFMPGTYNLSNYQLQWKVHSSEVGQVDENQRSG 1244
            PF+W  LSS ++ ++P ++T++PL++ +F PG Y+LS+Y+L W     E+ + +    SG
Sbjct: 1203 PFIWSGLSSTKIQIQPLSTTEIPLQISVFSPGIYDLSSYELNW-----ELSEHESATSSG 1257

Query: 1245 GGQGHPFYVTVLQ 1257
              QG+P+Y+TVLQ
Sbjct: 1258 TCQGYPYYLTVLQ 1270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 27,530,573
Number of extensions: 1165572
Number of successful extensions: 2841
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 1
Length of query: 1259
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1149
Effective length of database: 8,090,809
Effective search space: 9296339541
Effective search space used: 9296339541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)