Os03g0762100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0762100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 450.47 | 0.997 | 3.41 | 0.538 | 1.34 | 2.13 | -0.186 | 2.27 | 1.3 | 5.1 | 23.1 | 856 | -- | -- |
| 456.77 | 0.995 | 3.37 | 0.833 | 1.37 | 1.81 | -0.164 | -- | 1.36 | 5.12 | 23.32 | 883 | -- | -- |
| 450.56 | 0.989 | 3.41 | 0.537 | 1.34 | 2.13 | -- | 2.27 | 1.3 | 5.1 | 23.1 | 856 | -- | -- |
| 456.67 | 0.995 | 3.36 | 0.841 | 1.35 | 1.72 | -- | -- | 1.37 | 5.17 | 23.63 | 898 | -- | -- |
| 535.34 | 1.08 | 3.45 | 0.554 | -- | 2.63 | -- | 3.22 | 1.31 | -- | 22.08 | 554 | -- | -- |
| 495.54 | 1.04 | 3.43 | 0.357 | 1.36 | -- | -0.0509 | -- | 1.06 | 5.71 | -- | -- | -- | -- |
| 495.55 | 1.04 | 3.43 | 0.357 | 1.36 | -- | -- | -- | 1.06 | 5.71 | -- | -- | -- | -- |
| 514.72 | 1.06 | 3.35 | 0.914 | -- | 2.12 | -- | -- | 1.51 | -- | 29.89 | 434 | -- | -- |
| 472.4 | 1.01 | 3.39 | -- | 1.36 | 1.31 | -- | -- | 1.22 | 5.28 | 23.68 | 876 | -- | -- |
| 591.3 | 1.14 | 3.45 | 0.4 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 498.9 | 1.04 | 3.44 | -- | 1.36 | -- | -- | -- | 1.02 | 5.7 | -- | -- | -- | -- |
| 534.86 | 1.08 | 3.39 | -- | -- | 1.81 | -- | -- | 1.35 | -- | 30 | 422 | -- | -- |
| 595.51 | 1.14 | 3.46 | -- | -- | -- | -- | -- | 1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 441.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 8 | 443.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 12 | 443.62 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 19 | 444.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 34 | 444.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 16 |
| 43 | 445.45 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 47 | 445.57 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 58 | 445.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 69 | 446.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 70 | 446.26 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 5 |
| 87 | 446.66 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 105 | 447.03 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 113 | 447.31 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 131 | 447.77 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 13 |
| 135 | 447.81 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 18 |
| 136 | 447.87 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 11 |
| 151 | 448.09 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 20 |
| 185 | 448.44 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 22 |
| 242 | 449.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 257 | 449.47 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 269 | 449.60 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 294 | 450.02 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 19 |
| 295 | 450.02 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 300 | 450.06 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 318 | 450.26 | temperature | 20 | 720 | > th | dose independent | sin | 1 | NA |
| 356 | 450.63 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 369 | 450.76 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 374 | 450.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 388 | 450.93 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 474 | 451.60 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 484 | 451.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 11 |
| 516 | 451.83 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 522 | 451.87 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 549 | 452.05 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 555 | 452.08 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 562 | 452.16 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 576 | 452.30 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 611 | 452.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 619 | 452.79 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 654 | 453.06 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 676 | 453.23 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 757 | 454.14 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 775 | 454.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 875 | 455.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 996 | 456.28 | temperature | 20 | 270 | < th | dose dependent | sin | 0 | NA |