BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0762100 Os03g0762100|AK108604
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67390.1  | chr5:26887883-26888512 REVERSE LENGTH=177           69   2e-12
AT1G26620.1  | chr1:9195838-9198719 REVERSE LENGTH=868             56   1e-08
AT1G69360.1  | chr1:26072520-26075420 REVERSE LENGTH=897           54   6e-08
AT1G13940.1  | chr1:4762703-4765923 REVERSE LENGTH=1006            52   2e-07

>AT5G67390.1 | chr5:26887883-26888512 REVERSE LENGTH=177
          Length = 176

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 41/46 (89%)

Query: 5  MEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLK 50
          ME++   YDK  +KMAMLKHEETF+QQV+ELHRLY++QK+LM++++
Sbjct: 1  MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNME 46



>AT1G26620.1 | chr1:9195838-9198719 REVERSE LENGTH=868
          Length = 867

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 9  FEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKRELKNQ 56
          +  Y+KD +K  ML+HE  F+ QVHELHRLYR+QK L+ ++K +  N+
Sbjct: 10 YSGYEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKNLNE 57



>AT1G69360.1 | chr1:26072520-26075420 REVERSE LENGTH=897
          Length = 896

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 10 EHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLK 50
          + Y++D LK  ML+HE  F+ QV+ELHRLYR QK LM ++K
Sbjct: 53 DSYERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVK 93



>AT1G13940.1 | chr1:4762703-4765923 REVERSE LENGTH=1006
          Length = 1005

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 12  YDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKRELKNQ 56
           +DKD ++  ML+HE  F+ QV ELHR+YR QK +M +LKR+  N+
Sbjct: 61  FDKDVVRRTMLEHEAVFKTQVLELHRVYRTQKDMMDELKRKQFNK 105



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,939,569
Number of extensions: 77914
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 5
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)