BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0762100 Os03g0762100|AK108604
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0762100  Conserved hypothetical protein                      282   1e-76
Os12g0580600  Conserved hypothetical protein                       69   2e-12
Os03g0604500  Conserved hypothetical protein                       69   2e-12

>Os03g0762100 Conserved hypothetical protein
          Length = 230

 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 149/230 (64%)

Query: 1   MTMPMEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKRELKNQSNMS 60
           MTMPMEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKRELKNQSNMS
Sbjct: 1   MTMPMEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKRELKNQSNMS 60

Query: 61  TSSPNGFAEYSRAALDAMRSYEQCYXXXXXXXXXXXXXXXXXXXXLSLVPAVEYAQSPXX 120
           TSSPNGFAEYSRAALDAMRSYEQCY                    LSLVPAVEYAQSP  
Sbjct: 61  TSSPNGFAEYSRAALDAMRSYEQCYGAATRRGAAVHHAAAAARAALSLVPAVEYAQSPEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXVGDAASAKKRYSRNEHHXXXXXXXXXXXXXDVLVTGVR 180
                                 VGDAASAKKRYSRNEHH             DVLVTGVR
Sbjct: 121 EDAEETDDEEEAAAAELELTLAVGDAASAKKRYSRNEHHSPGQSFSSSSTESDVLVTGVR 180

Query: 181 DADAASPPYHHKRRPGPXXXXXXXXXXXXXXXXXXXXXXXXFHWLSLRMA 230
           DADAASPPYHHKRRPGP                        FHWLSLRMA
Sbjct: 181 DADAASPPYHHKRRPGPAAAFDVVQVDDGAVQAAPPPPPLLFHWLSLRMA 230



>Os12g0580600 Conserved hypothetical protein
          Length = 202

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 38/47 (80%)

Query: 3  MPMEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDL 49
          M M+++    D + +KMAMLKHEETFRQQVHELHRLYRIQ+ LM DL
Sbjct: 5  MRMDKLVRQCDMEVMKMAMLKHEETFRQQVHELHRLYRIQRQLMSDL 51



>Os03g0604500 Conserved hypothetical protein
          Length = 219

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query: 1  MTMPMEQVFEHYDKDTLKMAMLKHEETFRQQVHELHRLYRIQKLLMRDLKR 51
          M + ME++    D + +KMAMLKHEETF+QQV+ELHRLYR+QK LM DL R
Sbjct: 22 MMVQMEKLVRQCDMEVMKMAMLKHEETFKQQVYELHRLYRVQKQLMSDLNR 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,725,323
Number of extensions: 122961
Number of successful extensions: 375
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)