Os03g0752700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os03g0752700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.45 | 0.207 | 11 | -1.06 | 0.431 | 0.382 | -0.696 | -0.459 | 0.102 | 5.51 | 19.96 | 275 | -- | -- |
| 19.9 | 0.208 | 11 | -1.06 | 0.435 | 0.365 | -0.872 | -- | 0.0906 | 5.22 | 20 | 274 | -- | -- |
| 20.53 | 0.211 | 11 | -1.07 | 0.452 | 0.359 | -- | -0.598 | 0.102 | 5.28 | 19.95 | 275 | -- | -- |
| 21.92 | 0.218 | 11 | -1.06 | 0.435 | 0.364 | -- | -- | 0.0911 | 5.4 | 19.99 | 256 | -- | -- |
| 23.14 | 0.224 | 11 | -0.952 | -- | 0.709 | -- | -1.08 | 0.188 | -- | 13.55 | 462 | -- | -- |
| 22.8 | 0.224 | 11 | -1.08 | 0.649 | -- | -0.851 | -- | 0.067 | 4.44 | -- | -- | -- | -- |
| 24.76 | 0.233 | 11 | -1.08 | 0.643 | -- | -- | -- | 0.0715 | 4.38 | -- | -- | -- | -- |
| 23.24 | 0.225 | 11 | -1.07 | -- | 0.758 | -- | -- | 0.139 | -- | 7.18 | 520 | -- | -- |
| 50.88 | 0.332 | 11 | -- | 0.44 | 0.331 | -- | -- | 0.219 | 5.19 | 20.13 | 244 | -- | -- |
| 46.99 | 0.32 | 11 | -1.05 | -- | -- | -- | -- | 0.0885 | -- | -- | -- | -- | -- |
| 55.37 | 0.348 | 11 | -- | 0.623 | -- | -- | -- | 0.192 | 4.42 | -- | -- | -- | -- |
| 50.77 | 0.332 | 11 | -- | -- | 0.71 | -- | -- | 0.271 | -- | 11.26 | 439 | -- | -- |
| 76.2 | 0.407 | 11 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.85 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 17.91 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 4 | 17.95 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 23 | 18.01 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 30 | 18.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 34 | 18.09 | radiation | 10 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 43 | 18.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 44 | 18.12 | radiation | 10 | 43200 | > th | dose independent | sin | 12 | NA |
| 47 | 18.13 | radiation | 20 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 48 | 18.14 | radiation | 10 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 108 | 18.23 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 112 | 18.23 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 122 | 18.23 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 258 | 18.28 | radiation | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 266 | 18.28 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 14 |
| 304 | 18.32 | radiation | 10 | 43200 | > th | dose independent | sin | 1 | NA |
| 314 | 18.33 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 421 | 18.37 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 436 | 18.37 | radiation | 10 | 43200 | < th | dose dependent | sin | 22 | NA |
| 444 | 18.38 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 475 | 18.40 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 506 | 18.42 | radiation | 20 | 43200 | < th | dose dependent | sin | 19 | NA |
| 560 | 18.46 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 562 | 18.46 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 657 | 18.50 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 15 |
| 663 | 18.51 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 670 | 18.51 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 690 | 18.53 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 723 | 18.53 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 17 |
| 731 | 18.53 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 20 |
| 798 | 18.55 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 901 | 18.60 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 972 | 18.62 | radiation | 10 | 43200 | < th | dose dependent | no | NA | NA |