BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0752700 Os03g0752700|AK122157
         (612 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0752700  Heat shock protein DnaJ, N-terminal domain con...  1027   0.0  

>Os03g0752700 Heat shock protein DnaJ, N-terminal domain containing protein
          Length = 612

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/612 (84%), Positives = 519/612 (84%)

Query: 1   MSWGRFHRAPFPSGIPAMTRCSRHQPPAPPTVVVIXXXXXXXXXXXXXXXVFIIDGDAAK 60
           MSWGRFHRAPFPSGIPAMTRCSRHQPPAPPTVVVI               VFIIDGDAAK
Sbjct: 1   MSWGRFHRAPFPSGIPAMTRCSRHQPPAPPTVVVIDEDDDDLGDGPSDEEVFIIDGDAAK 60

Query: 61  GRASSGCKTKRGNSSCSNVINLXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVTTPGRVSP 120
           GRASSGCKTKRGNSSCSNVINL                           PAVTTPGRVSP
Sbjct: 61  GRASSGCKTKRGNSSCSNVINLDDDDEEEEEGGGGDRAGPSSAGAAAGSPAVTTPGRVSP 120

Query: 121 RNRYGLXXXXXXXXXXXXXXXXXXXXXXXCEILDDASGSARKQWEKAASRKSMPQGFRKX 180
           RNRYGL                       CEILDDASGSARKQWEKAASRKSMPQGFRK 
Sbjct: 121 RNRYGLDYVSDSYESDSSEGHSDGDDGSDCEILDDASGSARKQWEKAASRKSMPQGFRKS 180

Query: 181 XXXXXXXXXXQPDESEENDAECDINEYIRKYFSEDVLKKGGPISTSGANAKPSVPDAHDC 240
                     QPDESEENDAECDINEYIRKYFSEDVLKKGGPISTSGANAKPSVPDAHDC
Sbjct: 181 TSTSSAESSTQPDESEENDAECDINEYIRKYFSEDVLKKGGPISTSGANAKPSVPDAHDC 240

Query: 241 SKGNASNANEAEDCNATSRIDPDPACNDEATHSQNGSVPEKTAERSQSPHIDETFEPEQC 300
           SKGNASNANEAEDCNATSRIDPDPACNDEATHSQNGSVPEKTAERSQSPHIDETFEPEQC
Sbjct: 241 SKGNASNANEAEDCNATSRIDPDPACNDEATHSQNGSVPEKTAERSQSPHIDETFEPEQC 300

Query: 301 TDYSFVSANRVFPACSSANWKDQSPTFVSTPEKLDEKLSDGTYARKDETLIDAHNKSTTK 360
           TDYSFVSANRVFPACSSANWKDQSPTFVSTPEKLDEKLSDGTYARKDETLIDAHNKSTTK
Sbjct: 301 TDYSFVSANRVFPACSSANWKDQSPTFVSTPEKLDEKLSDGTYARKDETLIDAHNKSTTK 360

Query: 361 NKEMCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDXXXXXXXXXXXXXXXXXVI 420
           NKEMCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLD                 VI
Sbjct: 361 NKEMCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCASAASSNKNPSANVI 420

Query: 421 LGGCMPPQKDLVDGPEKSGQPAVAQVAADIQDGLIGAREKHKESDEYKRAQEEEWASRQR 480
           LGGCMPPQKDLVDGPEKSGQPAVAQVAADIQDGLIGAREKHKESDEYKRAQEEEWASRQR
Sbjct: 421 LGGCMPPQKDLVDGPEKSGQPAVAQVAADIQDGLIGAREKHKESDEYKRAQEEEWASRQR 480

Query: 481 QLRIQAEEAQRLRKRKKAEAMRLLDMEKRQKQRLEEVRESQRKNEADIQLKEKYRGVVRL 540
           QLRIQAEEAQRLRKRKKAEAMRLLDMEKRQKQRLEEVRESQRKNEADIQLKEKYRGVVRL
Sbjct: 481 QLRIQAEEAQRLRKRKKAEAMRLLDMEKRQKQRLEEVRESQRKNEADIQLKEKYRGVVRL 540

Query: 541 ELESMERRYIDMASILRALGIAAEGGEVKAAYKQALLKFHPDRVSRSDMYQQVKAEETFK 600
           ELESMERRYIDMASILRALGIAAEGGEVKAAYKQALLKFHPDRVSRSDMYQQVKAEETFK
Sbjct: 541 ELESMERRYIDMASILRALGIAAEGGEVKAAYKQALLKFHPDRVSRSDMYQQVKAEETFK 600

Query: 601 FISRLKEKMLRV 612
           FISRLKEKMLRV
Sbjct: 601 FISRLKEKMLRV 612



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,224,684
Number of extensions: 748641
Number of successful extensions: 3168
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)