BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0752700 Os03g0752700|AK122157
         (612 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69060.1  | chr1:25965055-25967273 FORWARD LENGTH=631          182   6e-46

>AT1G69060.1 | chr1:25965055-25967273 FORWARD LENGTH=631
          Length = 630

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/182 (54%), Positives = 130/182 (71%), Gaps = 8/182 (4%)

Query: 435 PEKSGQPAVAQVAADIQDGLIGAREKHKESDEYKRAQEEEWASRQRQLRIQAEEAQRLRK 494
           P  SGQ       A   D ++  RE  KE+DEYKRAQEEEW SRQRQL+IQA+EAQ+ RK
Sbjct: 445 PSTSGQVQGTNGTAPAIDVMLN-REILKETDEYKRAQEEEWESRQRQLQIQADEAQKQRK 503

Query: 495 RKKAEAMRLLDMEKRQKQRLEEVRESQRKNEADIQLKEKYRGVVRLELESMERRYIDMAS 554
           R+K E MR L+ME+RQK+R+EEVRE+Q+K+E ++ +KEK R  +   L+ +E +  +MA+
Sbjct: 504 RRKLENMRKLEMERRQKERVEEVRETQKKDEENMNMKEKVRAEITKSLKLLELKSFNMAA 563

Query: 555 ILRALGIAAEGG------EVKAAYKQALLKFHPDRVSR-SDMYQQVKAEETFKFISRLKE 607
           +LR LGI   GG      EV AAYK+A+LKFHPDR SR  D+ QQV+AEE FK I+R+K+
Sbjct: 564 LLRGLGIQVGGGISPLPNEVHAAYKRAVLKFHPDRASRGGDIKQQVEAEEKFKLIARMKD 623

Query: 608 KM 609
           K 
Sbjct: 624 KF 625



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,908,500
Number of extensions: 464519
Number of successful extensions: 2389
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 3
Length of query: 612
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 508
Effective length of database: 8,255,305
Effective search space: 4193694940
Effective search space used: 4193694940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)