FiT-DB / Search/ Help/ Sample detail

Os03g0737600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin H-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.21 (0.0184) R2 : 0.0659
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.219 (0.0387) R2dN8 : 0.0851 R2N8 : 0.0659
σ : 0.346
deviance : 54.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.1 0.266 8.28 -0.639 0.487 0.443 0.0696 -0.986 0.0365 15.6 20.52 1233 -- --
34.15 0.272 8.25 -0.463 0.478 0.58 0.173 -- 0.0718 15.5 20.5 1256 -- --
32.12 0.264 8.28 -0.641 0.488 0.443 -- -1 0.0361 15.6 20.51 1233 -- --
34.27 0.273 8.25 -0.468 0.493 0.61 -- -- 0.0742 15.4 20.2 1264 -- --
43.36 0.307 8.28 -0.668 -- 0.468 -- -1.14 0.0397 -- 19 1985 -- --
41.87 0.303 8.22 -0.225 0.45 -- 0.301 -- 0.203 15.7 -- -- -- --
42.14 0.304 8.22 -0.221 0.452 -- -- -- 0.205 15.7 -- -- -- --
44.64 0.313 8.24 -0.357 -- 0.446 -- -- 0.112 -- 20.2 1264 -- --
38.88 0.292 8.23 -- 0.399 0.316 -- -- 0.175 16.2 20.6 1107 -- --
53.42 0.342 8.22 -0.239 -- -- -- -- 0.193 -- -- -- -- --
43.42 0.308 8.22 -- 0.456 -- -- -- 0.229 15.7 -- -- -- --
47.16 0.321 8.23 -- -- 0.396 -- -- 0.153 -- 20.6 1588 -- --
54.94 0.346 8.21 -- -- -- -- -- 0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.69 humidity 90.0 14400 > th dose dependent rect. 24 19
3 30.73 humidity 90.0 14400 > th dose dependent rect. 2 14
10 30.74 humidity 90.0 14400 > th dose dependent rect. 2 12
20 30.81 humidity 90.0 14400 > th dose dependent sin 4 NA
45 30.91 humidity 90.0 14400 > th dose dependent rect. 12 21
50 30.93 humidity 90.0 14400 > th dose dependent rect. 3 8
95 31.00 humidity 90.0 14400 > th dose dependent no NA NA
101 31.01 humidity 90.0 14400 > th dose dependent rect. 6 23
119 31.05 humidity 90.0 14400 > th dose dependent rect. 11 18
159 31.15 humidity 90.0 14400 > th dose independent rect. 21 3
198 31.31 humidity 90.0 14400 > th dose dependent sin 14 NA
203 31.34 humidity 90.0 14400 > th dose independent rect. 20 15
222 31.39 humidity 90.0 14400 > th dose independent rect. 17 11
267 31.52 humidity 90.0 14400 > th dose independent sin 8 NA
268 31.52 humidity 90.0 14400 > th dose independent sin 12 NA
346 31.68 radiation 20.0 4320 > th dose dependent rect. 6 2
389 31.74 wind 1.0 43200 > th dose dependent rect. 4 2
399 31.75 wind 9.0 43200 < th dose dependent rect. 4 2
409 31.77 humidity 90.0 43200 > th dose dependent rect. 9 5
410 31.77 wind 1.0 43200 > th dose dependent rect. 23 7
421 31.79 wind 1.0 43200 > th dose dependent rect. 1 5
426 31.80 wind 1.0 43200 > th dose dependent rect. 1 2
430 31.82 precipitation 0.1 43200 < th dose independent rect. 6 4
431 31.82 humidity 90.0 14400 > th dose independent rect. 2 9
437 31.82 precipitation 0.1 43200 < th dose dependent rect. 6 4
443 31.83 temperature 25.0 43200 < th dose dependent rect. 9 1
448 31.84 humidity 90.0 14400 > th dose independent rect. 7 22
457 31.85 humidity 90.0 14400 > th dose independent rect. 9 20
461 31.85 wind 9.0 43200 < th dose dependent rect. 1 5
462 31.85 wind 9.0 43200 < th dose dependent rect. 23 7
464 31.86 precipitation 0.1 43200 > th dose independent rect. 6 4
473 31.86 precipitation 0.1 43200 > th dose dependent rect. 6 4
476 31.86 humidity 90.0 43200 > th dose dependent rect. 9 7
485 31.87 temperature 20.0 43200 > th dose independent rect. 8 1
520 31.91 temperature 20.0 43200 < th dose independent rect. 8 1
525 31.92 humidity 90.0 14400 > th dose independent no NA NA
526 31.92 temperature 20.0 1440 > th dose independent rect. 6 1
534 31.92 humidity 90.0 14400 > th dose dependent rect. 21 4
539 31.93 humidity 90.0 43200 > th dose independent rect. 9 5
544 31.94 precipitation 0.1 43200 > th dose independent rect. 7 1
549 31.95 precipitation 0.1 43200 < th dose independent rect. 7 1
550 31.95 temperature 20.0 4320 < th dose independent rect. 18 4
557 31.95 precipitation 0.1 43200 < th dose dependent rect. 7 1
563 31.96 radiation 30.0 4320 < th dose independent rect. 21 11
569 31.96 precipitation 0.1 43200 > th dose dependent rect. 7 1
577 31.97 humidity 90.0 14400 > th dose independent rect. 2 23
578 31.97 humidity 90.0 14400 > th dose independent rect. 23 23
580 31.97 wind 9.0 43200 < th dose dependent rect. 1 2
595 31.99 wind 9.0 43200 < th dose independent rect. 21 16
604 31.99 wind 3.0 43200 > th dose dependent rect. 1 8
605 32.00 humidity 80.0 14400 > th dose independent rect. 10 1
606 32.00 radiation 30.0 4320 < th dose independent rect. 6 2
640 32.03 wind 1.0 43200 < th dose dependent rect. 10 1
641 32.03 temperature 30.0 4320 < th dose dependent rect. 9 1
656 32.05 wind 7.0 43200 > th dose independent rect. 22 15
660 32.05 wind 7.0 43200 > th dose dependent rect. 10 2
667 32.06 radiation 30.0 43200 < th dose independent rect. 3 4
669 32.06 radiation 30.0 4320 < th dose independent rect. 2 6
682 32.07 temperature 10.0 4320 > th dose dependent rect. 9 1
687 32.07 wind 3.0 43200 > th dose dependent rect. 23 10
692 32.08 wind 7.0 43200 > th dose independent rect. 2 11
714 32.09 temperature 20.0 43200 < th dose independent rect. 19 1
718 32.09 wind 9.0 43200 < th dose independent rect. 4 9
731 32.10 wind 9.0 43200 < th dose independent rect. 10 2
739 32.10 temperature 20.0 1440 > th dose independent rect. 15 16
745 32.10 wind 7.0 43200 > th dose dependent rect. 21 16
750 32.11 humidity 80.0 43200 > th dose dependent rect. 12 1
760 32.12 temperature 20.0 1440 < th dose independent rect. 5 2
761 32.12 humidity 90.0 43200 < th dose independent rect. 10 4
778 32.13 temperature 20.0 4320 > th dose independent rect. 18 4
779 32.13 temperature 20.0 1440 < th dose independent rect. 15 16
786 32.14 wind 9.0 43200 > th dose independent rect. 10 2
804 32.15 wind 9.0 43200 < th dose independent rect. 9 4
805 32.15 temperature 20.0 43200 < th dose independent rect. 17 4
816 32.15 wind 7.0 43200 > th dose dependent rect. 9 4
831 32.17 temperature 20.0 43200 > th dose independent rect. 17 2
853 32.18 temperature 20.0 1440 > th dose independent sin 14 NA
854 32.18 wind 1.0 43200 > th dose independent rect. 10 1
855 32.18 humidity 90.0 14400 > th dose independent rect. 12 2
882 32.19 wind 9.0 43200 > th dose dependent rect. 18 1
891 32.20 wind 3.0 43200 > th dose independent rect. 14 1
892 32.20 wind 1.0 43200 < th dose independent rect. 10 1
893 32.20 humidity 90.0 43200 < th dose independent rect. 11 2
900 32.20 temperature 20.0 43200 < th dose independent rect. 7 14
915 32.21 wind 9.0 43200 > th dose independent rect. 9 4
919 32.21 temperature 20.0 43200 > th dose independent rect. 7 14
931 32.21 wind 7.0 43200 > th dose dependent rect. 1 12
935 32.22 temperature 20.0 4320 > th dose independent rect. 18 1
950 32.22 wind 7.0 43200 > th dose dependent rect. 3 10
951 32.23 wind 3.0 43200 < th dose independent rect. 14 1
956 32.23 temperature 20.0 1440 > th dose independent rect. 17 10
958 32.23 radiation 30.0 43200 < th dose independent rect. 17 14
968 32.24 temperature 20.0 1440 < th dose independent sin 13 NA
975 32.24 temperature 20.0 1440 > th dose independent rect. 16 12