BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0737600 Os03g0737600|AK101854
(330 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0737600 Cyclin H-1 661 0.0
Os09g0504400 Cyclin, N-terminal domain containing protein 77 2e-14
>Os03g0737600 Cyclin H-1
Length = 330
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/330 (95%), Positives = 316/330 (95%)
Query: 1 MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD 60
MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD
Sbjct: 1 MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD 60
Query: 61 HVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEH 120
HVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEH
Sbjct: 61 HVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEH 120
Query: 121 HPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRS 180
HPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRS
Sbjct: 121 HPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRS 180
Query: 181 IEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSND 240
IEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSND
Sbjct: 181 IEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSND 240
Query: 241 MHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRKLKHCL 300
MHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRKLKHCL
Sbjct: 241 MHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRKLKHCL 300
Query: 301 DPSSQDXXXXXXXXXXXXXXRAANEAQLDS 330
DPSSQD RAANEAQLDS
Sbjct: 301 DPSSQDEHKKKEKKSKHKSKRAANEAQLDS 330
>Os09g0504400 Cyclin, N-terminal domain containing protein
Length = 257
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 60 DHVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVME 119
D V + + ++ EE RL+++ I + K ++ ATA+ YF+R Y + S+ E
Sbjct: 21 DKVPQADSDRGITLEEFRLVKIHMSFHIWRLAQQVKVRQRVIATAVTYFRRVYTRKSMTE 80
Query: 120 HHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQ----------DHQIILNNEMIVLKSLD 169
+ P+ + TC+Y + KVEE+ V A L I++ + + IL EM +L++LD
Sbjct: 81 YDPRLVAPTCLYLASKVEESTVQARLLVFYIKKMCASDEKYRFEIKDILEMEMKLLEALD 140
Query: 170 FDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQ 229
+ L+VY PYR + + D AG + DL Q A V+ D L++ P
Sbjct: 141 YYLVVYHPYRPLLQLLQD------AG------ITDLTQFAWGIVNDTYKMDLILIHPPYM 188
Query: 230 LALAALHKSN 239
+ALA ++ ++
Sbjct: 189 IALACIYIAS 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,534,754
Number of extensions: 416215
Number of successful extensions: 847
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)