BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0737600 Os03g0737600|AK101854
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27620.1 | chr5:9771762-9774684 FORWARD LENGTH=337 373 e-104
AT5G48630.2 | chr5:19721663-19723119 REVERSE LENGTH=257 79 5e-15
AT5G48640.1 | chr5:19723653-19725641 REVERSE LENGTH=254 74 1e-13
AT1G35440.1 | chr1:13035294-13036037 REVERSE LENGTH=248 62 3e-10
AT4G19600.1 | chr4:10673619-10676532 FORWARD LENGTH=542 59 3e-09
AT5G45190.2 | chr5:18277808-18280733 REVERSE LENGTH=591 56 2e-08
>AT5G27620.1 | chr5:9771762-9774684 FORWARD LENGTH=337
Length = 336
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/309 (58%), Positives = 236/309 (76%), Gaps = 10/309 (3%)
Query: 1 MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD 60
MADF+TST R +WIF L +R+ AANQRA + L + GTT+++VD GSL+YP+
Sbjct: 1 MADFQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVD-ASGSLTYPKDK-- 57
Query: 61 HVVGSS-----GVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQW 115
VGS +KPLS +EER MR FYE K+QEVCSAF FPHKIQATA+ YFKRFYLQW
Sbjct: 58 --VGSGDQADKKLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQW 115
Query: 116 SVMEHHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVY 175
SVM+HHPK IMLTC+Y++CK+EENHVSAEE+GKGI QDH+IIL EM VL+SL+FDLIVY
Sbjct: 116 SVMQHHPKEIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVY 175
Query: 176 APYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAAL 235
APYR+IEGFV++ME+F +A + E Q+L+ L + A ++ DK+MLTDAPLL+ PGQLALA+L
Sbjct: 176 APYRAIEGFVNNMEEFLQARDDEIQKLESLLKGATAEADKVMLTDAPLLFPPGQLALASL 235
Query: 236 HKSNDMHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRK 295
+N + +++F+RYLE++ S+ +S+ + ++ I YLV+ K P+ KDM+HI+RK
Sbjct: 236 RIANGVLGVIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKCPSEKDMKHINRK 295
Query: 296 LKHCLDPSS 304
LK CL SS
Sbjct: 296 LKSCLGHSS 304
>AT5G48630.2 | chr5:19721663-19723119 REVERSE LENGTH=257
Length = 256
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 18/184 (9%)
Query: 69 KPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLT 128
+ +S E+ RL+++ I ++ K ++ ATA+ Y +R Y + S+ E+ P+ + T
Sbjct: 33 RGISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPT 92
Query: 129 CIYSSCKVEENHVSAEEL---GKGIQQDHQI------ILNNEMIVLKSLDFDLIVYAPYR 179
C+Y +CK EE+ V A+ L K + D + IL EM VL++L+F L+V+ PYR
Sbjct: 93 CLYLACKAEESVVHAKLLVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYR 152
Query: 180 SIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKM--MLTDAPLLYTPGQLALAALHK 237
S+ F+ D +G + + L ++ +M +L P L T + +A++HK
Sbjct: 153 SLPEFLQD------SGIND-TSMTHLTWGLVNDTYRMDLILIHPPFLITLACIYIASVHK 205
Query: 238 SNDM 241
D+
Sbjct: 206 EKDI 209
>AT5G48640.1 | chr5:19723653-19725641 REVERSE LENGTH=254
Length = 253
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 69 KPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLT 128
+ +S ++ +L++ I ++ K ++ ATAI Y +R Y++ S++E P+ + LT
Sbjct: 30 RGISIDDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALT 89
Query: 129 CIYSSCKVEENHVSAEELGKGIQQ---------DHQIILNNEMIVLKSLDFDLIVYAPYR 179
C+Y + K EE+ V A L I++ + + IL EM VL++LD+ L+V+ PYR
Sbjct: 90 CLYLASKAEESIVQARNLVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYR 149
Query: 180 SIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALH 236
S+ F+ D A N ++ Q V+ D L++ P ++ALA ++
Sbjct: 150 SLSEFLQD-----AALND-----VNMNQITWGIVNDTYKMDLILVHPPYRIALACIY 196
>AT1G35440.1 | chr1:13035294-13036037 REVERSE LENGTH=248
Length = 247
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 66 SGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHI 125
S + ++ +EE R Y +QE+ P K ATAI+ +RF+ + S+ ++ PK +
Sbjct: 20 SRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTV 79
Query: 126 MLTCIYSSCKVEENHVSA--------------EELGKGIQQDHQIILNNEMIVLKSLDFD 171
+ C++ + KVE + A E L ++ +L E +VL +L+ D
Sbjct: 80 AIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPLRDVFERLKMTVLTGEKLVLSTLECD 139
Query: 172 LIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLA 231
L + PY+ + +V R+ E R L Q A + V+ + T L + P Q+A
Sbjct: 140 LEIEHPYKLVMDWVK------RSVKTEDGR--RLCQAAFNFVNDSLRTSLCLQFGPSQIA 191
Query: 232 LAALHKSNDMHKI 244
AA++ M K+
Sbjct: 192 SAAIYIGLSMCKM 204
>AT4G19600.1 | chr4:10673619-10676532 FORWARD LENGTH=542
Length = 541
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 71 LSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLTCI 130
+ ++E +R Y +Q++ K P ATAII+ RF+++ S + + I C+
Sbjct: 51 IDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCM 110
Query: 131 YSSCKVEENH--------VSAEELGKG-------------IQQDHQIILNNEMIVLKSLD 169
+ + KVEE VS E + K +Q ++ILN E IVL +L
Sbjct: 111 FLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLG 170
Query: 170 FDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQ 229
FD VY PY+ + V+ ++ F A N L Q A + V+ + T L + P
Sbjct: 171 FDFNVYHPYKPL---VEAIKKFKVAQNA-------LAQVAWNFVNDGLRTSLCLQFKPHH 220
Query: 230 LALAAL 235
+A A+
Sbjct: 221 IAAGAI 226
>AT5G45190.2 | chr5:18277808-18280733 REVERSE LENGTH=591
Length = 590
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 102 ATAIIYFKRFYLQWSVMEHHPKHIMLTCIYSSCKVEEN--------HVSAEELGKG---- 149
ATAII+ RF+ + S ++ + I C++ + KVEE VS E + K
Sbjct: 93 ATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGA 152
Query: 150 ---------IQQDHQIILNNEMIVLKSLDFDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQ 200
+Q ++ILN E IVL +L FDL VY PY+ + V+ ++ F A N
Sbjct: 153 SQKIKQKEVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPL---VEAIKKFKVAQNA--- 206
Query: 201 RLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAAL 235
L Q A + V+ + T L + P +A A+
Sbjct: 207 ----LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAI 237
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,933,860
Number of extensions: 280777
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)