Os03g0725100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0725100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.58 | 0.247 | 10.3 | 0.92 | 0.552 | 0.42 | -0.14 | 1.51 | 0.258 | 9.37 | 20.7 | 1692 | -- | -- |
| 32.26 | 0.265 | 10.4 | 0.678 | 0.561 | 0.195 | -0.13 | -- | 0.181 | 9.18 | 22.2 | 1052 | -- | -- |
| 27.56 | 0.244 | 10.3 | 0.952 | 0.554 | 0.375 | -- | 1.49 | 0.27 | 9.34 | 21 | 1726 | -- | -- |
| 32.16 | 0.264 | 10.4 | 0.63 | 0.563 | 0.204 | -- | -- | 0.173 | 9.48 | 22.1 | 1087 | -- | -- |
| 44.69 | 0.311 | 10.3 | 1.06 | -- | 0.264 | -- | 1.49 | 0.292 | -- | 21.7 | 1620 | -- | -- |
| 33.55 | 0.272 | 10.4 | 0.72 | 0.543 | -- | -0.18 | -- | 0.251 | 9.39 | -- | -- | -- | -- |
| 33.66 | 0.272 | 10.4 | 0.714 | 0.544 | -- | -- | -- | 0.251 | 9.44 | -- | -- | -- | -- |
| 47.16 | 0.321 | 10.4 | 0.649 | -- | 0.242 | -- | -- | 0.185 | -- | 22.1 | 1087 | -- | -- |
| 34.71 | 0.274 | 10.4 | -- | 0.554 | 0.52 | -- | -- | 0.00696 | 9.48 | 22 | 47520 | -- | -- |
| 51 | 0.334 | 10.4 | 0.71 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 47.09 | 0.321 | 10.4 | -- | 0.543 | -- | -- | -- | 0.172 | 9.34 | -- | -- | -- | -- |
| 52.26 | 0.337 | 10.4 | -- | -- | 0.494 | -- | -- | -0.0162 | -- | 26.2 | 47520 | -- | -- |
| 64.31 | 0.374 | 10.4 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.09 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 27.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 4 | 27.42 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 5 | 27.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 6 | 27.44 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 8 | 27.46 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 13 | 27.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 15 | 27.56 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 61 | 27.97 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 85 | 28.09 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 86 | 28.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 92 | 28.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 99 | 28.13 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 115 | 28.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 150 | 28.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 152 | 28.21 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 156 | 28.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 161 | 28.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 163 | 28.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 175 | 28.23 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 192 | 28.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 207 | 28.24 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 219 | 28.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 225 | 28.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 232 | 28.26 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 238 | 28.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 249 | 28.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 295 | 28.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 298 | 28.29 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 325 | 28.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 349 | 28.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 361 | 28.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 375 | 28.32 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 381 | 28.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 395 | 28.33 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 413 | 28.35 | temperature | 20 | 1440 | > th | dose independent | sin | 0 | NA |
| 445 | 28.38 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 467 | 28.39 | wind | 3 | 43200 | < th | dose dependent | sin | 12 | NA |
| 472 | 28.40 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 492 | 28.42 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 505 | 28.43 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 546 | 28.46 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 555 | 28.47 | temperature | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 556 | 28.47 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 572 | 28.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 609 | 28.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 672 | 28.56 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 685 | 28.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 19 |
| 699 | 28.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 712 | 28.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 738 | 28.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 744 | 28.60 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 782 | 28.62 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 797 | 28.63 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 803 | 28.63 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 810 | 28.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 823 | 28.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 21 |
| 830 | 28.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 888 | 28.66 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 901 | 28.67 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 912 | 28.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 928 | 28.68 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 932 | 28.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 983 | 28.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |