BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0725100 Os03g0725100|AK119472
         (661 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0725100  Conserved hypothetical protein                     1235   0.0  

>Os03g0725100 Conserved hypothetical protein
          Length = 661

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/661 (94%), Positives = 625/661 (94%)

Query: 1   SAEVDGDDVISDPHTVSETTTTDGDNLSHSGKKQKLISRAEQPTGHNSSDQDELRTXXXX 60
           SAEVDGDDVISDPHTVSETTTTDGDNLSHSGKKQKLISRAEQPTGHNSSDQDELRT    
Sbjct: 1   SAEVDGDDVISDPHTVSETTTTDGDNLSHSGKKQKLISRAEQPTGHNSSDQDELRTRNSD 60

Query: 61  XXXXXXXXXXXXQKRLESGEEVLQDXXXXXXXXXXXHHDGEDRNSRRKDEYLRDIKPDVE 120
                       QKRLESGEEVLQD           HHDGEDRNSRRKDEYLRDIKPDVE
Sbjct: 61  NSRGRSGSSKDNQKRLESGEEVLQDRRSRRINDARRHHDGEDRNSRRKDEYLRDIKPDVE 120

Query: 121 RSHLASRSRDDTYHPYANRDRDMRGRSYDRVRDTEIWQRREESVHNRRAKEEDVRLEHNA 180
           RSHLASRSRDDTYHPYANRDRDMRGRSYDRVRDTEIWQRREESVHNRRAKEEDVRLEHNA
Sbjct: 121 RSHLASRSRDDTYHPYANRDRDMRGRSYDRVRDTEIWQRREESVHNRRAKEEDVRLEHNA 180

Query: 181 EVGARNRNKMRPPVDRNDRIEDPHARKRLDDGDWRGSRPRERGDVVLNRRENIDDSHMKR 240
           EVGARNRNKMRPPVDRNDRIEDPHARKRLDDGDWRGSRPRERGDVVLNRRENIDDSHMKR
Sbjct: 181 EVGARNRNKMRPPVDRNDRIEDPHARKRLDDGDWRGSRPRERGDVVLNRRENIDDSHMKR 240

Query: 241 KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNARMREKADDRY 300
           KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNARMREKADDRY
Sbjct: 241 KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNARMREKADDRY 300

Query: 301 HTKHKEDNWRQREREDRHRPKHDNTVTLQRDEXXXXXXXXXILDDKLVTSGRKQDESRSA 360
           HTKHKEDNWRQREREDRHRPKHDNTVTLQRDE         ILDDKLVTSGRKQDESRSA
Sbjct: 301 HTKHKEDNWRQREREDRHRPKHDNTVTLQRDEGRGSGRGGRILDDKLVTSGRKQDESRSA 360

Query: 361 GLSKEAQERSRQNDPLRRDQGAEENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTHDG 420
           GLSKEAQERSRQNDPLRRDQGAEENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTHDG
Sbjct: 361 GLSKEAQERSRQNDPLRRDQGAEENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTHDG 420

Query: 421 NRLSSNSGARQVSRDRYRESTRKGRSSDINEHDLPKSSKRRREDHESHRGGKVDVKGVSE 480
           NRLSSNSGARQVSRDRYRESTRKGRSSDINEHDLPKSSKRRREDHESHRGGKVDVKGVSE
Sbjct: 421 NRLSSNSGARQVSRDRYRESTRKGRSSDINEHDLPKSSKRRREDHESHRGGKVDVKGVSE 480

Query: 481 QENSRDHTVSSKKGQNPQRESFVKQAEEDPMSDDENHEDSRRGRSKLERWTSHKEIDYSS 540
           QENSRDHTVSSKKGQNPQRESFVKQAEEDPMSDDENHEDSRRGRSKLERWTSHKEIDYSS
Sbjct: 481 QENSRDHTVSSKKGQNPQRESFVKQAEEDPMSDDENHEDSRRGRSKLERWTSHKEIDYSS 540

Query: 541 IDNENAPTFSSIKSDVQAPTADELGKSEAAAAGNSELKSGGDNGQTSEKNAEERDRHLDT 600
           IDNENAPTFSSIKSDVQAPTADELGKSEAAAAGNSELKSGGDNGQTSEKNAEERDRHLDT
Sbjct: 541 IDNENAPTFSSIKSDVQAPTADELGKSEAAAAGNSELKSGGDNGQTSEKNAEERDRHLDT 600

Query: 601 VERLKRRSERFKLPMPGEKDAPQSKKVDTEVQPPQIESASADLEVKPERPARKRRWTGTG 660
           VERLKRRSERFKLPMPGEKDAPQSKKVDTEVQPPQIESASADLEVKPERPARKRRWTGTG
Sbjct: 601 VERLKRRSERFKLPMPGEKDAPQSKKVDTEVQPPQIESASADLEVKPERPARKRRWTGTG 660

Query: 661 S 661
           S
Sbjct: 661 S 661



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,625,910
Number of extensions: 1174235
Number of successful extensions: 5772
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5726
Number of HSP's successfully gapped: 3
Length of query: 661
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 554
Effective length of database: 11,448,903
Effective search space: 6342692262
Effective search space used: 6342692262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 159 (65.9 bits)