BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0725100 Os03g0725100|AK119472
(661 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58040.1 | chr5:23488865-23494000 FORWARD LENGTH=1197 127 2e-29
>AT5G58040.1 | chr5:23488865-23494000 FORWARD LENGTH=1197
Length = 1196
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 262/539 (48%), Gaps = 97/539 (17%)
Query: 131 DTYHPYANRDRDMRGRSYDRVRDTEIWQRREESVHNRRAKEEDVRL-EHNAEVGARNRNK 189
D+ + Y+ R+ + +R D +W+R+E+ ++RR +E R + + G R R K
Sbjct: 690 DSTYIYSIASREDFDKRKERDVDGAVWRRKEDDPYSRRGGDEGSRKRDREDDPGFRQRGK 749
Query: 190 MRPPVDRNDRIEDPHARKRLDDGDWRGSRPRERGDVVLNRRENI---DDSHMKRKKDEEN 246
MR R+ + P +RK +DD R NI DD KR+KDEE
Sbjct: 750 MRENEIRSKDDQVP-SRKHMDDAGMR----------------NIYEPDDHINKRRKDEEY 792
Query: 247 MRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNARMREKADDRYHTKHKE 306
+RR +PE +I +GQ R+ +R KRERDD ++ ++RD ++R+ DD + ++
Sbjct: 793 LRRSRPEKNEISYGQ-----RESMSRVKRERDDRLEHQKRDVQHKIRDDFDDHGSLRQRD 847
Query: 307 DNWRQREREDRHRPK---------HDNTVTLQRDEXXXXXXXXXILDDKLVTSGRKQDES 357
D + QR+ +R R + H++ ++ + E +D+ S R +DE
Sbjct: 848 DIYMQRDGNERLRERDVLDKLKLPHEDGISARGRERQVAVRGHRGSEDR---SSRMKDEY 904
Query: 358 RSAG---LSKEAQERSRQNDPLRRDQGAEENNMQNRGRSDVHPRDENPNNSERNTRQEKP 414
+++ ++K+ ++Q RRD EE++ +RG D R +N N+E+ RQE+
Sbjct: 905 KASDKEHVTKDTLRHAKQTK--RRDYPGEESSSHHRGHEDFSARTDNIVNNEKKPRQER- 961
Query: 415 NNTHDGNRLSSNSGARQVSRDRYRESTRKGRSSDINEHDLPKSSKRRREDHESHRGGKVD 474
+GA+ D++ ++ R D D + K +RE ES
Sbjct: 962 ------------TGAKI---DKFIDTLDGQRLQDRKHKDSRRKIKEQREGTES------- 999
Query: 475 VKGVSEQ-ENSRDHTVSSKKGQN---------PQRESFVKQAEEDPMSDDENHEDSRRGR 524
+S+Q E + V+ KG N P + + K+ +E+ S DE H DS+RGR
Sbjct: 1000 ---LSKQGEQNGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIH-DSKRGR 1055
Query: 525 SKLERWTSHKEIDYSSIDNENAPTFSSIKSD-------VQAPTADELGKSEAAAAGNSEL 577
+KLERW SHKE + ++ +++ S ++ + P +GKS +E
Sbjct: 1056 TKLERWASHKERE-DAVSAKSSSISSKLEEKENNTNGRLSEPVHGSIGKSRDV----TEE 1110
Query: 578 KSGGDNGQTSEKNAEER---DRHLDTVERLKRRSERFKLPMPGEKDAPQSKKVDTEVQP 633
K G D T K+ E+ DRHLDTVE+LK+RSERFKLPMP EKD KK+++E P
Sbjct: 1111 KIGHDLADT--KDGSEKGPGDRHLDTVEKLKKRSERFKLPMPTEKDTTGVKKMESETLP 1167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.126 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,293,614
Number of extensions: 721601
Number of successful extensions: 4444
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4089
Number of HSP's successfully gapped: 60
Length of query: 661
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,227,889
Effective search space: 4574706284
Effective search space used: 4574706284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 115 (48.9 bits)