Os03g0713000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein.
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Os03g0713000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.74 | 0.403 | 11.8 | -1.08 | 4.27 | -2.43 | 3.51 | -1.7 | -0.268 | 21.2 | 0.9865 | 278 | 11.1 | -- |
| 77.13 | 0.409 | 11.8 | -1.13 | 4.24 | -2.43 | 2.05 | -- | -0.267 | 21.2 | 0.7706 | 272 | 11.4 | -- |
| 86.67 | 0.434 | 11.8 | -1.32 | 4.23 | -2.41 | -- | 1.08 | -0.296 | 21.2 | 0.2119 | 256 | 11.3 | -- |
| 90.97 | 0.444 | 11.8 | -1.3 | 4.23 | -2.44 | -- | -- | -0.298 | 21.2 | 0.05902 | 257 | 11.3 | -- |
| 298.68 | 0.809 | 11.6 | -1.15 | -- | 2.5 | -- | 2.26 | -0.193 | -- | 6.096 | 2560 | 12 | -- |
| 128.54 | 0.532 | 11.7 | -1.04 | 3.05 | -- | 2.94 | -- | -0.187 | 19.5 | -- | -- | -- | -- |
| 152.33 | 0.578 | 11.7 | -1.11 | 3.06 | -- | -- | -- | -0.181 | 19.4 | -- | -- | -- | -- |
| 133.05 | 0.537 | 11.7 | -1.21 | -- | -3.71 | -- | -- | -0.375 | -- | 32.13 | 1063 | 7.99 | -- |
| 134.64 | 0.54 | 11.8 | -- | 4.29 | -2.43 | -- | -- | -0.164 | 21.1 | 1.179 | 277 | 11.3 | -- |
| 650.57 | 1.19 | 11.7 | -1.16 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 184.62 | 0.636 | 11.7 | -- | 3.07 | -- | -- | -- | -0.0582 | 19.4 | -- | -- | -- | -- |
| 158.56 | 0.586 | 11.6 | -- | -- | -3.93 | -- | -- | -0.192 | -- | 10 | 1023 | 7.98 | -- |
| 685.76 | 1.22 | 11.6 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 6 | 69.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 8 | 69.88 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 9 | 70.10 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 21 | 70.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 22 | 71.05 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 31 | 71.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 33 | 71.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 34 | 71.67 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 35 | 71.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 46 | 72.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 51 | 72.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 53 | 72.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 59 | 72.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 61 | 72.85 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 62 | 72.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 66 | 73.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 67 | 73.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 69 | 73.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 74 | 73.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 76 | 73.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 78 | 73.88 | radiation | 1.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 80 | 74.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 83 | 74.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 84 | 74.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 91 | 74.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 92 | 74.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 94 | 74.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 102 | 74.52 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 103 | 74.59 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 152 | 75.62 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 154 | 75.66 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 162 | 75.77 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 175 | 76.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 177 | 76.06 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 191 | 76.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 192 | 76.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 203 | 76.58 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 205 | 76.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 206 | 76.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 210 | 76.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 211 | 76.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 212 | 76.71 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 217 | 76.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 240 | 76.98 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 245 | 77.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 260 | 77.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 261 | 77.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 262 | 77.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 263 | 77.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 264 | 77.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 265 | 77.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 272 | 77.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 273 | 77.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 274 | 77.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 276 | 77.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 277 | 77.28 | radiation | 40.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 278 | 77.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 281 | 77.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 302 | 77.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 303 | 77.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 316 | 77.59 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 331 | 77.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 341 | 77.85 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 352 | 78.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 353 | 78.03 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 376 | 78.22 | radiation | 40.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 378 | 78.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 391 | 78.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 8 |
| 392 | 78.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 423 | 78.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 430 | 78.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 431 | 78.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 437 | 78.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 459 | 78.84 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 475 | 79.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 476 | 79.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 484 | 79.18 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 486 | 79.18 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 519 | 79.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 542 | 79.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 598 | 80.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 612 | 80.18 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 630 | 80.36 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 6 |
| 631 | 80.36 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 702 | 80.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 705 | 80.75 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 711 | 80.81 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 739 | 80.98 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 790 | 81.31 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 792 | 81.31 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 795 | 81.31 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 827 | 81.44 | wind | 1.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 938 | 81.96 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 945 | 82.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 16 |
| 946 | 82.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 947 | 82.01 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 952 | 82.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 973 | 82.21 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 989 | 82.30 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 7 |