BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0713000 Os03g0713000|009-180-C09
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0713000  Pyridoxal-5\'-phosphate-dependent enzyme, beta...   250   3e-67
Os04g0555900  Pyridoxal-5\'-phosphate-dependent enzyme, beta...    72   2e-13

>Os03g0713000 Pyridoxal-5\'-phosphate-dependent enzyme, beta subunit domain
           containing protein
          Length = 137

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/137 (91%), Positives = 126/137 (91%)

Query: 1   YAKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPVXXXXXXXXXXXY 60
           YAKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPV           Y
Sbjct: 1   YAKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPVGGGGLIAGIAAY 60

Query: 61  VKRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGVAVKVVGEETFRLCRELV 120
           VKRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGVAVKVVGEETFRLCRELV
Sbjct: 61  VKRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGVAVKVVGEETFRLCRELV 120

Query: 121 DGIVLVSRDAICASIKV 137
           DGIVLVSRDAICASIKV
Sbjct: 121 DGIVLVSRDAICASIKV 137



>Os04g0555900 Pyridoxal-5\'-phosphate-dependent enzyme, beta subunit domain
           containing protein
          Length = 339

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 2   AKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPVXXXXXXXXXXXYV 61
           AK+  E+ G   + PF++ + ISGQGT+ +E++ ++   +  I VP+             
Sbjct: 148 AKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVP-EIDTIIVPISGGGLISGVALAA 206

Query: 62  KRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGVAVKVVGEETFRLCRELVD 121
           K + P ++I+  EP  A+  A S   G+ + L      ADG+    +G+ T+ + R+LVD
Sbjct: 207 KAINPSIRILAAEPKGADDSAQSKAAGKIITLPSTNTIADGLRA-FLGDLTWPVVRDLVD 265

Query: 122 GIVLVSRDAICASIKV 137
            I++V  +AI  ++K+
Sbjct: 266 DIIVVDDNAIVDAMKM 281



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,271,037
Number of extensions: 140221
Number of successful extensions: 294
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)