BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0713000 Os03g0713000|009-180-C09
         (137 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10050.1  | chr3:3099164-3101741 REVERSE LENGTH=593            212   6e-56
AT4G11640.1  | chr4:7021770-7023252 FORWARD LENGTH=332             59   8e-10

>AT3G10050.1 | chr3:3099164-3101741 REVERSE LENGTH=593
          Length = 592

 Score =  212 bits (539), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 115/136 (84%)

Query: 1   YAKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPVXXXXXXXXXXXY 60
           +AK R E+EG TFIPPFDHPDVI+GQGT+GMEI RQ +GPLHAIFVPV           Y
Sbjct: 220 HAKIRAEEEGLTFIPPFDHPDVIAGQGTVGMEITRQAKGPLHAIFVPVGGGGLIAGIAAY 279

Query: 61  VKRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGVAVKVVGEETFRLCRELV 120
           VKRV PEVKIIGVEP+DANAMALSL HG+RV+L+QVGGFADGVAVK VGEETFR+ R L+
Sbjct: 280 VKRVSPEVKIIGVEPADANAMALSLHHGERVILDQVGGFADGVAVKEVGEETFRISRNLM 339

Query: 121 DGIVLVSRDAICASIK 136
           DG+VLV+RDAICASIK
Sbjct: 340 DGVVLVTRDAICASIK 355



>AT4G11640.1 | chr4:7021770-7023252 FORWARD LENGTH=332
          Length = 331

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 2   AKQRCEQEGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPVXXXXXXXXXXXYV 61
           A +  ++ G   I P++   +ISGQGTI +E++ Q+Q  + AI VP+             
Sbjct: 139 ASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQ-EIDAIVVPISGGGLISGVALAA 197

Query: 62  KRVRPEVKIIGVEPSDANAMALSLCHGQRVMLEQVGGFADGV 103
           K ++P ++II  EP  A+  A S   G+ + L      ADG+
Sbjct: 198 KSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGL 239



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,664,477
Number of extensions: 86270
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 106 (45.4 bits)