Os03g0701500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GNS1/SUR4 membrane protein family protein.
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Os03g0701500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GNS1/SUR4 membrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.23 | 0.429 | 9.94 | 1.08 | 1.08 | -0.673 | -0.738 | 10.6 | -0.344 | 1.08 | 29.45 | 3910 | -- | -- |
| 91.34 | 0.445 | 10.2 | -0.658 | 1.09 | 0.507 | -0.29 | -- | -0.641 | 1.27 | 31.79 | 12501 | -- | -- |
| 85.27 | 0.43 | 9.93 | 1.16 | 1.09 | -0.737 | -- | 11.3 | -0.347 | 1.19 | 29.54 | 3326 | -- | -- |
| 91.27 | 0.445 | 10.2 | -0.684 | 1.11 | 0.604 | -- | -- | -0.744 | 1.3 | 30.77 | 18843 | -- | -- |
| 156.32 | 0.582 | 9.9 | 1.2 | -- | -0.68 | -- | 11.9 | -0.334 | -- | 32.4 | 3824 | -- | -- |
| 100.32 | 0.47 | 10.2 | -0.448 | 1.13 | -- | -0.594 | -- | -0.476 | 1.17 | -- | -- | -- | -- |
| 101.75 | 0.472 | 10.2 | -0.427 | 1.13 | -- | -- | -- | -0.473 | 1.25 | -- | -- | -- | -- |
| 159.89 | 0.589 | 10.1 | -0.538 | -- | 1.16 | -- | -- | -0.35 | -- | 35.2 | 3099 | -- | -- |
| 101.42 | 0.469 | 10.2 | -- | 1.1 | 0.399 | -- | -- | -0.592 | 1.23 | 30.9 | 18419 | -- | -- |
| 180.84 | 0.628 | 10.1 | -0.383 | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
| 106.56 | 0.483 | 10.1 | -- | 1.12 | -- | -- | -- | -0.426 | 1.24 | -- | -- | -- | -- |
| 165.37 | 0.599 | 10.1 | -- | -- | 0.67 | -- | -- | -0.23 | -- | 30.13 | 1116 | -- | -- |
| 184.71 | 0.634 | 10.1 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.04 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 17 |
| 3 | 82.44 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 4 | 82.56 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 8 | 82.95 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 13 | 83.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 15 | 83.21 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 16 | 83.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 17 | 83.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 20 | 83.30 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 21 | 83.31 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 22 | 83.37 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 21 |
| 26 | 83.42 | wind | 1 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 43 | 83.52 | temperature | 30 | 720 | < th | dose independent | sin | 17 | NA |
| 45 | 83.52 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 81 | 83.64 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 83 | 83.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 11 |
| 91 | 83.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 92 | 83.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 94 | 83.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 95 | 83.76 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 97 | 83.77 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 100 | 83.77 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 105 | 83.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 106 | 83.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 107 | 83.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 110 | 83.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 112 | 83.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 115 | 83.81 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 117 | 83.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 139 | 83.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 142 | 83.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 185 | 83.87 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 255 | 83.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 259 | 83.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 262 | 83.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 268 | 83.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 282 | 83.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 339 | 84.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 414 | 84.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 442 | 84.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 445 | 84.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 451 | 84.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 456 | 84.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 474 | 84.16 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 538 | 84.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 539 | 84.19 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 565 | 84.19 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 592 | 84.22 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 688 | 84.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 696 | 84.24 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 775 | 84.31 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 8 |
| 818 | 84.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 853 | 84.34 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |