BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0701500 Os03g0701500|AK063166
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0701500 GNS1/SUR4 membrane protein family protein 414 e-116
AK108585 68 9e-12
>Os03g0701500 GNS1/SUR4 membrane protein family protein
Length = 279
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/265 (80%), Positives = 214/265 (80%)
Query: 15 VDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPLPSPHPRXXXXXXXXX 74
VDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPLPSPHPR
Sbjct: 15 VDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPLPSPHPRALRAVSALH 74
Query: 75 XXXXXXXXXXXXXXXXXSVAATAPSAWWAFCFPPGGATAASGPVFFWAHVFYLSKVYELG 134
SVAATAPSAWWAFCFPPGGATAASGPVFFWAHVFYLSKVYELG
Sbjct: 75 SAVLLALSAAMAAGCVLSVAATAPSAWWAFCFPPGGATAASGPVFFWAHVFYLSKVYELG 134
Query: 135 DXXXXXXXXXXXXXXHVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAMYGYYLCCS 194
D HVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAMYGYYLCCS
Sbjct: 135 DTLLILLGRRPLTLLHVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAMYGYYLCCS 194
Query: 195 LGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNASLLAL 254
LGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNASLLAL
Sbjct: 195 LGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNASLLAL 254
Query: 255 FLDFHXXXXXXXXXXXSRSEVVKEE 279
FLDFH SRSEVVKEE
Sbjct: 255 FLDFHGAAYAAAKGKKSRSEVVKEE 279
>AK108585
Length = 300
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 99/249 (39%), Gaps = 23/249 (9%)
Query: 25 WEPGRTPAST-PSFAAAVICAYLATVF---LLHRRVVPLPSPHPRXXXXXXXXXXXXXXX 80
W PG++P ST P+ AAVI YLA +F L + PL +
Sbjct: 27 WIPGKSPISTVPALVAAVI-TYLAVIFGGRELMKNRAPLTTSIKLPFLLHNLALTFGSGL 85
Query: 81 XXXXXXXXXXXSVAATAPSAWWAFCFPPGGATAASGPVFFWAHVFYLSKVYELGDXXXXX 140
V ++ C G A + + + + Y K +EL D
Sbjct: 86 LLALMLEEIVPIVRRNG--LFYGIC----GEGAWTMKLETYYMINYYFKYWELIDTVFLV 139
Query: 141 XXXXXXXXXHVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAMYGYYLCCSLGLRWP 200
HVYHH+A +C+ L + S+ + + N AVHV MY YY SL +R P
Sbjct: 140 LKKKPLAFLHVYHHSATAVLCFSQLHGKTSVSWVVICLNLAVHVLMYFYYALTSLKIRCP 199
Query: 201 PRWKRAVTELQIAQFLFSFAASAVMLWRHFA---------AGGCEGMAGWAFNAVFN-AS 250
WK++VT QI QF+ + +FA G C G AF+ + S
Sbjct: 200 --WKKSVTTAQITQFVIDLFVVYFASYNYFAYTYFPNVPHVGTCAGKEHAAFSGIICLTS 257
Query: 251 LLALFLDFH 259
L LF+ F+
Sbjct: 258 YLFLFIAFY 266
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.136 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,241,557
Number of extensions: 290433
Number of successful extensions: 927
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 3
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)