BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0701500 Os03g0701500|AK063166
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06470.1 | chr3:1984206-1985042 FORWARD LENGTH=279 200 8e-52
AT3G06460.1 | chr3:1982681-1983577 FORWARD LENGTH=299 171 6e-43
AT4G36830.1 | chr4:17349511-17350380 FORWARD LENGTH=290 86 2e-17
AT1G75000.1 | chr1:28163650-28164586 FORWARD LENGTH=282 81 5e-16
>AT3G06470.1 | chr3:1984206-1985042 FORWARD LENGTH=279
Length = 278
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 15 VDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPLPSPHPRXXXXXXXXX 74
V+HP +++F W G T ST F + V+ YL+ FLL + LPS PR
Sbjct: 13 VNHPYISNFTWIEGETLGSTVFFVSVVVSVYLSATFLLRSAIDSLPSLSPRILKPITAVH 72
Query: 75 XXXXXXXXXXXXXXXXXSV----AATAPSAWW--AFCFPPGGATAASGPVFFWAHVFYLS 128
S+ A++ P A + A CFP +GP+FFWA VFYLS
Sbjct: 73 SLILCLLSLVMAVGCTLSITSSHASSDPMARFLHAICFPVD--VKPNGPLFFWAQVFYLS 130
Query: 129 KVYELGDXXXXX--XXXXXXXXXHVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAM 186
K+ E GD HVYHHA V+ MCYLWL TRQS+ PIAL TN+ VHV M
Sbjct: 131 KILEFGDTILIILGKSIQRLSFLHVYHHATVVVMCYLWLRTRQSMFPIALVTNSTVHVIM 190
Query: 187 YGYYLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAV 246
YGYY C++G R P+WKR VT+ QI QF+FSF S ML H GC G+ GW FNA
Sbjct: 191 YGYYFLCAVGSR--PKWKRLVTDCQIVQFVFSFGLSGWMLREHLFGSGCTGIWGWCFNAA 248
Query: 247 FNASLLALFLDFH 259
FNASLLALF +FH
Sbjct: 249 FNASLLALFSNFH 261
>AT3G06460.1 | chr3:1982681-1983577 FORWARD LENGTH=299
Length = 298
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 15 VDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPLPSPHPRXXXXXXXXX 74
V HP +A+F W G T ST F V+ YL+ FLL V LP+ PR
Sbjct: 13 VHHPYIANFTWTEGETLGSTVFFVFVVVSLYLSATFLLRYTVDSLPTLGPRILKPITAVH 72
Query: 75 XXXXXXXXXXXXXXXXXS-VAATAPSA--WWAFCFPPGGATAASGPVFFWAHVFYLSKVY 131
S ++++ P A + A CFP GP+FFWA VFYLSK+
Sbjct: 73 SLILFLLSLTMAVGCTLSLISSSDPKARLFDAVCFPLD--VKPKGPLFFWAQVFYLSKIL 130
Query: 132 ELGDXXXXXXXXXXXXXX--HVYHHAAVIAMCYLWLATRQSLMPIALATNAAVHVAMYGY 189
E D HVYHHA V+ +CYLWL TRQS+ P+ L N+ VHV MYGY
Sbjct: 131 EFVDTLLIILNKSIQRLSFLHVYHHATVVILCYLWLRTRQSMFPVGLVLNSTVHVIMYGY 190
Query: 190 YLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAV-MLWRHFAAGGCEGMAGWAFNAVFN 248
Y C++G R P+WK+ VT Q+ QF F A ML H+ GC G+ FN VF
Sbjct: 191 YFLCAIGSR--PKWKKLVTNFQMVQFAFGMGLGAAWMLPEHYFGSGCAGIWTVYFNGVFT 248
Query: 249 ASLLALFLDFH 259
ASLLALF +FH
Sbjct: 249 ASLLALFYNFH 259
>AT4G36830.1 | chr4:17349511-17350380 FORWARD LENGTH=290
Length = 289
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 17/258 (6%)
Query: 16 DHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLH---------RRVVPL---PSPH 63
+HP + FRW ++ ST SF I Y+A LH R VPL P H
Sbjct: 15 EHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSSLHILLSAVRRSNRSVPLGHIPEIH 74
Query: 64 PRXXXXXXXXXXXXXXXXXXXXXXXX--XXSVAATAPSAWWAFCFPPGGATAASGPVFFW 121
+ TA W CFP G T SG VFFW
Sbjct: 75 SLLMSILSATIFAGILLSAAAEIRDTRWLWRRSKTATPLQWLLCFPLG--TRPSGRVFFW 132
Query: 122 AHVFYLSKVYELGDXXXXXXXXXXXXXXHVYHHAAVIAMCYLWLATRQSLMPIALATNAA 181
++VFYL++ + ++ ++ + +LWL QS +A+ +
Sbjct: 133 SYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFLWLEFSQSYQILAILSTTL 192
Query: 182 VHVAMYGYYLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGW 241
V+ +YGY GL + V Q+ + + A +L H GGC G+ W
Sbjct: 193 VYSVVYGYRFWTGFGLP-GSAFPSFVVNCQLVLVGCNLVSHAGVLTMHLFKGGCNGIGAW 251
Query: 242 AFNAVFNASLLALFLDFH 259
N+V N ++L LFL+F+
Sbjct: 252 GLNSVLNGAILLLFLNFY 269
>AT1G75000.1 | chr1:28163650-28164586 FORWARD LENGTH=282
Length = 281
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 27/264 (10%)
Query: 16 DHPAVASFRWEPGRTPASTPSFAAAVICAYL-----------ATVFLLHRR----VVPLP 60
+HP + +FRW P ++ AST SF + +Y+ T+ L +RR + P+P
Sbjct: 10 EHPTIVNFRWSPTQSYASTWSFLFTAVSSYIIAAVTLHLLLLITLSLSNRRRGFSLGPIP 69
Query: 61 SPHPRXXXXXXXXXXXXXXXXXXXXXXXXXXSVAATAPSAW-WAFCFPPGGATAASGPVF 119
+ H T +A W CFP G T ASG VF
Sbjct: 70 ALHSLTISIISAVIFVGILLSAAAEIRDTRWLWRRTRTTALQWFLCFPVG--TRASGRVF 127
Query: 120 FWAHVFYLSKVYELGDXXXXXXXXXXXXXXHVYHHAAVIAMCYLWLATRQSLMPIALATN 179
FW++ FYLS+ L + + ++++ + +LWL QS +A+
Sbjct: 128 FWSYAFYLSRFLHLFRTFFSVIRRRKLSFFQLINQSSLLCISFLWLEYSQSFQVVAILLT 187
Query: 180 AAVHVAMYGYYLCCSLGLR---WPPRWKRAVTELQ-IAQFLFSFAASAVMLWRHFAAGGC 235
+ +YGY +GLR +P V Q I + V+ GGC
Sbjct: 188 TVSYAVVYGYRFWTEIGLRGACFP-----FVGNCQAILLGCMTVCHVGVLCIHLVKRGGC 242
Query: 236 EGMAGWAFNAVFNASLLALFLDFH 259
G+ W FN+V NA + L+L F+
Sbjct: 243 NGIGAWLFNSVLNAVITLLYLKFY 266
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.136 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,600,918
Number of extensions: 142083
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 4
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)