Os03g0701000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0701000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.18 | 0.371 | 11.2 | -0.28 | 0.347 | 0.536 | -1.19 | 3.02 | 0.0156 | 13.1 | 10.25 | 295 | -- | -- |
| 63.66 | 0.372 | 11.3 | -0.713 | 0.285 | 0.661 | -1.03 | -- | -0.0929 | 11.7 | 24.46 | 259 | -- | -- |
| 63.61 | 0.371 | 11.2 | -0.178 | 0.475 | 0.441 | -- | 3.25 | 0.0542 | 13.5 | 14.39 | 710 | -- | -- |
| 67.67 | 0.383 | 11.2 | -0.735 | 0.328 | 0.61 | -- | -- | -0.0526 | 12.6 | 26.2 | 317 | -- | -- |
| 74.29 | 0.401 | 11.3 | -0.683 | -- | 0.779 | -- | 1.07 | -0.117 | -- | 17.14 | 148 | -- | -- |
| 72.45 | 0.399 | 11.2 | -0.639 | 0.478 | -- | -0.664 | -- | -0.0271 | 14.1 | -- | -- | -- | -- |
| 73.83 | 0.402 | 11.2 | -0.657 | 0.489 | -- | -- | -- | -0.0299 | 14.6 | -- | -- | -- | -- |
| 71.24 | 0.393 | 11.3 | -0.793 | -- | 0.819 | -- | -- | -0.0794 | -- | 25.55 | 95 | -- | -- |
| 81.38 | 0.42 | 11.2 | -- | 0.409 | 0.503 | -- | -- | 0.0852 | 13.3 | 28.95 | 638 | -- | -- |
| 87.77 | 0.438 | 11.3 | -0.678 | -- | -- | -- | -- | -0.0422 | -- | -- | -- | -- | -- |
| 85.22 | 0.432 | 11.2 | -- | 0.501 | -- | -- | -- | 0.0433 | 14.7 | -- | -- | -- | -- |
| 87.36 | 0.437 | 11.2 | -- | -- | 0.738 | -- | -- | 0.0129 | -- | 25.7 | 95 | -- | -- |
| 99.9 | 0.467 | 11.2 | -- | -- | -- | -- | -- | 0.033 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 27 | 61.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 48 | 61.45 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 52 | 61.49 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 57 | 61.56 | temperature | 25 | 270 | > th | dose dependent | sin | 11 | NA |
| 58 | 61.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 62 | 61.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 82 | 61.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 87 | 61.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 91 | 61.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 95 | 61.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 107 | 61.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 120 | 61.89 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 122 | 61.91 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 123 | 61.92 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 21 |
| 140 | 61.98 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 144 | 61.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 160 | 62.03 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 172 | 62.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 201 | 62.11 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 206 | 62.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 237 | 62.19 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 265 | 62.25 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 6 |
| 275 | 62.26 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 282 | 62.27 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 291 | 62.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 301 | 62.31 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 346 | 62.38 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 21 |
| 378 | 62.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 389 | 62.46 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 409 | 62.49 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 9 |
| 473 | 62.53 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 474 | 62.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 475 | 62.54 | temperature | 15 | 720 | > th | dose dependent | sin | 20 | NA |
| 487 | 62.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 491 | 62.56 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 520 | 62.60 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 523 | 62.60 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 569 | 62.62 | wind | 3 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 590 | 62.65 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 600 | 62.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 707 | 62.79 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 19 |
| 733 | 62.82 | wind | 5 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 737 | 62.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 740 | 62.83 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 757 | 62.85 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 777 | 62.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 852 | 62.92 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 878 | 62.95 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 17 |
| 909 | 62.98 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 10 |
| 983 | 63.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 984 | 63.05 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 5 |