BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0701000 Os03g0701000|AK100005
         (645 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19820.1  | chr5:6695731-6701247 REVERSE LENGTH=1117           969   0.0  
AT4G27640.1  | chr4:13798013-13802976 REVERSE LENGTH=1049         136   3e-32

>AT5G19820.1 | chr5:6695731-6701247 REVERSE LENGTH=1117
          Length = 1116

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/628 (73%), Positives = 534/628 (85%), Gaps = 1/628 (0%)

Query: 1    FPEPALQAHAASAILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEGXXXXXXXXX 60
            F  P +QAHAASA+LNFSENC P+IL+PYLDG+V KLL LLQ G QMVQEG         
Sbjct: 473  FQNPRVQAHAASAVLNFSENCTPEILSPYLDGVVSKLLVLLQNGKQMVQEGALTALASVA 532

Query: 61   XXXQEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQV 120
               QEHFQKYYD VMPYLK+ILMNATDKS RMLRAKSMECISLVGMAVGK +FK+DA+QV
Sbjct: 533  DSSQEHFQKYYDTVMPYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQV 592

Query: 121  MEVLMTLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSV 180
            MEVLM+LQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYM VVMPPLLQSAQLKPDV++
Sbjct: 593  MEVLMSLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTI 652

Query: 181  TSAGPEDENGESDDEGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWID 240
            TSA  EDE  +SDDE +ETI LGDKRIGI+TS+LEEKATACNMLCCYADELKEGFFPWID
Sbjct: 653  TSADSEDEAEDSDDESMETIILGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 712

Query: 241  QVATTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPA 300
            QVA TLVPLLKFYFHEEVR+AAVSAMPEL+RSAKLAIEK +SQGRD SYLKQLSDYI+PA
Sbjct: 713  QVAPTLVPLLKFYFHEEVRRAAVSAMPELMRSAKLAIEKGESQGRDLSYLKQLSDYIIPA 772

Query: 301  LVEAIHKEPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTD 360
            ++EA+HKEPDT+IC SMLE++NE +Q+SG LL+EG++RSIVD IK+V+TAS+ R+RER +
Sbjct: 773  MLEALHKEPDTEICVSMLEAINECLQISGNLLDEGKIRSIVDEIKQVMTASSSRKRERGE 832

Query: 361  RAKAXXXXXXXXXXXXXXXXXXXXIFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLA 420
            RA A                    IFDQ+G+ LGTLVKTFK  FLPFFDELS YLTPM  
Sbjct: 833  RAHAEDFDAEEGELIKEENEQEEEIFDQVGEILGTLVKTFKASFLPFFDELSSYLTPMWG 892

Query: 421  KDKTVEERRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICA 480
            +DKT EERRIAICIFDDVAE CREAA +YYDTYLP +LEAC  E+P++RQAAVYG+G+CA
Sbjct: 893  RDKTAEERRIAICIFDDVAEQCREAAFKYYDTYLPFVLEACNDESPEVRQAAVYGLGVCA 952

Query: 481  EFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVV 540
            EFGGS F+P  GEALSRL  VI+ PNA   +NAMAYDNAVSA+GKICQFHRD ID+SQV+
Sbjct: 953  EFGGSVFKPLIGEALSRLNVVIQLPNARQSENAMAYDNAVSAVGKICQFHRDSIDSSQVL 1012

Query: 541  PAWLSCLPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA 600
            PAWL+CLPI ND++EAK+VH+QLC+M+E+ D +LLG NNQ+LPKI+ +FAE+L  GKD+ 
Sbjct: 1013 PAWLNCLPISNDVLEAKVVHDQLCSMVERQDVDLLGPNNQHLPKILIVFAEVL-TGKDVV 1071

Query: 601  TEQTFSKMVNLLRQLQTTLPPSVLASTW 628
            T++T  +M+N+LRQLQ TLPPS LASTW
Sbjct: 1072 TQETAGRMINILRQLQQTLPPSALASTW 1099



>AT4G27640.1 | chr4:13798013-13802976 REVERSE LENGTH=1049
          Length = 1048

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 140/625 (22%), Positives = 276/625 (44%), Gaps = 45/625 (7%)

Query: 13   AILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEGXXXXXXXXXXXXQEHFQKYYD 72
            A+  F EN   +I+ P LD ++GKL++ L+   + +QE             ++ F  Y +
Sbjct: 442  ALAAFCENMGEEIV-PLLDHLMGKLMAALENSPRNLQETCMSAIGSVAAAAEQAFNPYAE 500

Query: 73   AVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQVMEVLMTLQGSQM 132
             V+  +K  ++   D+  R  RA+S E + +V M+VG++  +      ++    + G ++
Sbjct: 501  RVLELMKFFMVLTKDEDLRA-RARSTELVGIVAMSVGRKGMEAILPPFIDA--AISGFEL 557

Query: 133  EADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSVTSAGPEDENGES 192
            E  + +  Y    ++ + + L   F  Y+  VMP +  S  L    +V     +DEN  +
Sbjct: 558  EFSE-LREYTHGFFSNVAEILDDTFAQYLPRVMPLVFASCNLDDGSAVDIDESDDEN-VN 615

Query: 193  DDEGVETITLGD-----KRIGIRTSLLEEKATACNMLCCYADELKEGFFPWIDQVATTLV 247
            D  GV +    D     + I +RT +L+EKA A   L  +A   K  F P++++ +  ++
Sbjct: 616  DFGGVSSDDDADDEPRVRNISVRTGVLDEKAAATQALGLFALHTKSAFAPYLEE-SLKIM 674

Query: 248  PLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPALVEAIHK 307
                 YFHE+VR  AV+ +  +L +A  AI ++ + G  ++   ++ D ++   ++ +  
Sbjct: 675  DKHSAYFHEDVRLQAVTGLKHILAAAH-AIFQTHNDGTGKA--NEILDTVMNNYIKTMTD 731

Query: 308  EPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTDRAKAXXX 367
            + D ++ A    S+ + ++  G    +  +  +VD    ++T  A           A   
Sbjct: 732  DDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKA-----------ACQQ 780

Query: 368  XXXXXXXXXXXXXXXXXIFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLAKDKTVEE 427
                             + D + D L    K   + F P F +    L       +  ++
Sbjct: 781  LEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQD 840

Query: 428  RRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICAEFGGSAF 487
            R + +    +VA+        Y D  +P +L+   S     R+ A + +G   + GG   
Sbjct: 841  RTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETA 900

Query: 488  RPHTGEALSRLYNVIKHPNALDLDNAMAY-DNAVSALGKICQFHRDGIDASQVVPAWLSC 546
              + G+ L  +      P   D +  +A  DNA  A  ++   H   +  +QV+P +L  
Sbjct: 901  LKYFGDVLRGI-----SPLFGDSEPDLAVRDNAAGATARMIVVHPQLVPLNQVLPVFLRG 955

Query: 547  LPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA-----T 601
            LP+K D  E+  V+  + +++  S+ ++  H    +P++V IF ++L +  +        
Sbjct: 956  LPLKEDQEESMAVYTCIYSLVSSSNPQIFSH----VPELVKIFGQVLESPVEKVEVKAIV 1011

Query: 602  EQTFSKMV----NLLRQLQTTLPPS 622
             +TFS ++    N L+ + ++LPPS
Sbjct: 1012 GRTFSHLISVYGNQLQPIISSLPPS 1036



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,293,570
Number of extensions: 480841
Number of successful extensions: 1373
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1363
Number of HSP's successfully gapped: 2
Length of query: 645
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 540
Effective length of database: 8,227,889
Effective search space: 4443060060
Effective search space used: 4443060060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)