BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0701000 Os03g0701000|AK100005
         (645 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0701000  Armadillo-like helical domain containing protein   1229   0.0  
Os07g0575100  Armadillo-like helical domain containing protein    947   0.0  

>Os03g0701000 Armadillo-like helical domain containing protein
          Length = 645

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/628 (94%), Positives = 596/628 (94%)

Query: 1   FPEPALQAHAASAILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEGXXXXXXXXX 60
           FPEPALQAHAASAILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEG         
Sbjct: 1   FPEPALQAHAASAILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEGALTALASAA 60

Query: 61  XXXQEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQV 120
              QEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQV
Sbjct: 61  DSSQEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQV 120

Query: 121 MEVLMTLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSV 180
           MEVLMTLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSV
Sbjct: 121 MEVLMTLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSV 180

Query: 181 TSAGPEDENGESDDEGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWID 240
           TSAGPEDENGESDDEGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWID
Sbjct: 181 TSAGPEDENGESDDEGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWID 240

Query: 241 QVATTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPA 300
           QVATTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPA
Sbjct: 241 QVATTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPA 300

Query: 301 LVEAIHKEPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTD 360
           LVEAIHKEPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTD
Sbjct: 301 LVEAIHKEPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTD 360

Query: 361 RAKAXXXXXXXXXXXXXXXXXXXXIFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLA 420
           RAKA                    IFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLA
Sbjct: 361 RAKAEDFDSEEEDLLREENEQEDEIFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLA 420

Query: 421 KDKTVEERRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICA 480
           KDKTVEERRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICA
Sbjct: 421 KDKTVEERRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICA 480

Query: 481 EFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVV 540
           EFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVV
Sbjct: 481 EFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVV 540

Query: 541 PAWLSCLPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA 600
           PAWLSCLPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA
Sbjct: 541 PAWLSCLPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA 600

Query: 601 TEQTFSKMVNLLRQLQTTLPPSVLASTW 628
           TEQTFSKMVNLLRQLQTTLPPSVLASTW
Sbjct: 601 TEQTFSKMVNLLRQLQTTLPPSVLASTW 628



>Os07g0575100 Armadillo-like helical domain containing protein
          Length = 1157

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/609 (74%), Positives = 520/609 (85%), Gaps = 1/609 (0%)

Query: 1    FPEPALQAHAASAILNFSENCRPDILTPYLDGIVGKLLSLLQTGNQMVQEGXXXXXXXXX 60
            F  P +QAHAASAILNFSENC P+ILTPYLDGIV KLL LLQ G QMVQEG         
Sbjct: 480  FQNPRVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVA 539

Query: 61   XXXQEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQV 120
               QEHF+KYYDAVMPYLK+ILMNATDKSNRMLRAKSMECISLVGMAVGK KF+DDAKQV
Sbjct: 540  DSSQEHFKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 599

Query: 121  MEVLMTLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSV 180
            MEVLM+LQG+ ME DDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDV++
Sbjct: 600  MEVLMSLQGTTMENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTI 659

Query: 181  TSAGPEDENGESDDEGVETITLGDKRIGIRTSLLEEKATACNMLCCYADELKEGFFPWID 240
            TSA   D++ ESDD+ +ETITLGDKRIGIRTS+LEEKATACNMLCCYADELKEGFFPWID
Sbjct: 660  TSAE-SDDDIESDDDSIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWID 718

Query: 241  QVATTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPA 300
            QVA TLVPLLKFYFHEEVR+AAV+AMPELLRSAKLA+EK  +QGRDESY+KQLSDYI+PA
Sbjct: 719  QVAPTLVPLLKFYFHEEVRRAAVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPA 778

Query: 301  LVEAIHKEPDTQICASMLESLNESIQLSGTLLEEGQVRSIVDGIKEVITASALRRRERTD 360
            LVEA+HKEP+T++C+SML+SLNE +QLSG LL+E QVR++ D IK VI ASA R+RER++
Sbjct: 779  LVEALHKEPETEMCSSMLDSLNECMQLSGRLLDENQVRAVSDEIKNVIIASATRKRERSE 838

Query: 361  RAKAXXXXXXXXXXXXXXXXXXXXIFDQIGDCLGTLVKTFKTYFLPFFDELSVYLTPMLA 420
            R+KA                    +FDQ+G+CLGTL+KTFK  FLPFFDELSVY+TPML 
Sbjct: 839  RSKAEDFDADEGELLKEENEQEEEVFDQVGECLGTLIKTFKASFLPFFDELSVYITPMLG 898

Query: 421  KDKTVEERRIAICIFDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICA 480
            KDKT EERRIAICIFDD+AE CRE+A++YYDTYLP LLEA   EN D+RQAAVYG+G+CA
Sbjct: 899  KDKTAEERRIAICIFDDIAEQCRESALKYYDTYLPFLLEASNDENSDVRQAAVYGVGVCA 958

Query: 481  EFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVV 540
            EFGG  FRP  GEALS+L NVI HP A   DN MAYDNAVSALGKICQFHRDGIDA+QV+
Sbjct: 959  EFGGHVFRPLVGEALSKLNNVITHPEAKHADNIMAYDNAVSALGKICQFHRDGIDAAQVI 1018

Query: 541  PAWLSCLPIKNDLIEAKIVHEQLCTMLEKSDRELLGHNNQYLPKIVSIFAEILCAGKDLA 600
            PAWL CLPIK+D IEAK+VH+QL +M+E+SD ++LG ++QYLPKIVSIFAE+LC G +LA
Sbjct: 1019 PAWLGCLPIKDDKIEAKVVHDQLSSMVERSDADILGPHSQYLPKIVSIFAEVLCNGTELA 1078

Query: 601  TEQTFSKMV 609
            T++T  +M+
Sbjct: 1079 TDETTKRMI 1087



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,749,098
Number of extensions: 706837
Number of successful extensions: 1808
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1799
Number of HSP's successfully gapped: 2
Length of query: 645
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 538
Effective length of database: 11,448,903
Effective search space: 6159509814
Effective search space used: 6159509814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)