Os03g0650400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0650400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.71 | 0.318 | 9.72 | -0.325 | 1.19 | 0.657 | -0.213 | -1.55 | -0.141 | 7.93 | 22.01 | 928 | -- | -- |
| 47.74 | 0.322 | 9.71 | -0.246 | 1.19 | 0.647 | 0.455 | -- | -0.118 | 8 | 14.05 | 1020 | -- | -- |
| 45.61 | 0.315 | 9.72 | -0.353 | 1.19 | 0.664 | -- | -1.42 | -0.15 | 7.93 | 20.04 | 935 | -- | -- |
| 47.9 | 0.322 | 9.71 | -0.237 | 1.14 | 0.673 | -- | -- | -0.122 | 8.16 | 14.04 | 1096 | -- | -- |
| 87.5 | 0.436 | 9.74 | -0.252 | -- | 0.516 | -- | -1.08 | -0.0992 | -- | 47.66 | 1477 | -- | -- |
| 57.89 | 0.357 | 9.68 | -0.1 | 0.836 | -- | 0.287 | -- | 0.0204 | 7.91 | -- | -- | -- | -- |
| 58.13 | 0.357 | 9.68 | -0.092 | 0.835 | -- | -- | -- | 0.0202 | 7.94 | -- | -- | -- | -- |
| 88.26 | 0.438 | 9.73 | -0.0805 | -- | 0.472 | -- | -- | -0.0718 | -- | 49.16 | 1517 | -- | -- |
| 48.84 | 0.325 | 9.7 | -- | 1.15 | 0.639 | -- | -- | -0.107 | 8.09 | 18.64 | 1047 | -- | -- |
| 96.11 | 0.458 | 9.7 | -0.0832 | -- | -- | -- | -- | 0.0312 | -- | -- | -- | -- | -- |
| 58.35 | 0.357 | 9.68 | -- | 0.834 | -- | -- | -- | 0.0305 | 7.95 | -- | -- | -- | -- |
| 88.08 | 0.437 | 9.71 | -- | -- | 0.56 | -- | -- | -0.0522 | -- | 49.38 | 1514 | -- | -- |
| 96.29 | 0.458 | 9.7 | -- | -- | -- | -- | -- | 0.0404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.23 | radiation | 30 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 17 | 47.25 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 7 |
| 32 | 47.29 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 21 |
| 33 | 47.29 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 36 | 47.35 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 40 | 47.39 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 6 |
| 44 | 47.40 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 46 | 47.41 | radiation | 40 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 49 | 47.45 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 2 |
| 50 | 47.45 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 69 | 47.52 | radiation | 10 | 720 | > th | dose independent | sin | 20 | NA |
| 72 | 47.53 | radiation | 20 | 720 | < th | dose independent | rect. | 13 | 4 |
| 86 | 47.62 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 95 | 47.66 | radiation | 30 | 720 | < th | dose dependent | rect. | 12 | 14 |
| 97 | 47.71 | radiation | 1 | 720 | > th | dose dependent | sin | 19 | NA |
| 99 | 47.73 | humidity | 70 | 720 | > th | dose independent | rect. | 6 | 19 |
| 104 | 47.76 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 112 | 47.79 | radiation | 30 | 720 | < th | dose independent | rect. | 13 | 20 |
| 182 | 47.95 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 21 |
| 242 | 48.07 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 253 | 48.10 | radiation | 10 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 274 | 48.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 275 | 48.13 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 15 |
| 296 | 48.17 | radiation | 10 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 315 | 48.21 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 316 | 48.21 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 3 |
| 322 | 48.22 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 20 |
| 333 | 48.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 339 | 48.25 | radiation | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 345 | 48.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 348 | 48.26 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 21 |
| 354 | 48.27 | humidity | 70 | 720 | > th | dose independent | sin | 21 | NA |
| 369 | 48.29 | radiation | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 376 | 48.31 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 22 |
| 390 | 48.32 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 441 | 48.38 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 476 | 48.43 | humidity | 70 | 720 | > th | dose independent | rect. | 8 | 23 |
| 477 | 48.43 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 23 |
| 495 | 48.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 506 | 48.46 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 518 | 48.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 528 | 48.49 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 537 | 48.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 583 | 48.52 | radiation | 40 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 585 | 48.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 589 | 48.53 | radiation | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 593 | 48.54 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 10 |
| 604 | 48.55 | radiation | 20 | 720 | > th | dose independent | no | NA | NA |
| 701 | 48.56 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 740 | 48.57 | radiation | 40 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 772 | 48.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 773 | 48.59 | radiation | 40 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 783 | 48.60 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 786 | 48.60 | radiation | 20 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 806 | 48.61 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 813 | 48.61 | radiation | 30 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 827 | 48.62 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 830 | 48.63 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 845 | 48.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 854 | 48.64 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 866 | 48.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 873 | 48.66 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 910 | 48.68 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 11 |
| 959 | 48.70 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 967 | 48.70 | humidity | 60 | 720 | > th | dose dependent | sin | 21 | NA |
| 968 | 48.70 | humidity | 80 | 720 | < th | dose dependent | sin | 10 | NA |
| 970 | 48.70 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 979 | 48.71 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 982 | 48.71 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 985 | 48.71 | humidity | 80 | 1440 | < th | dose dependent | sin | 6 | NA |
| 997 | 48.71 | radiation | 40 | 720 | < th | dose dependent | rect. | 8 | 23 |