BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0650400 Os03g0650400|AK101644
(803 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0650400 Conserved hypothetical protein 1266 0.0
Os12g0623300 285 1e-76
Os12g0623200 212 1e-54
>Os03g0650400 Conserved hypothetical protein
Length = 803
Score = 1266 bits (3277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/787 (82%), Positives = 647/787 (82%)
Query: 17 DSPMRPQVSRYYSKKRGSSHSRNGKDDANHDESKNQSPGLPLSRQSLSSSATHTYHTGGF 76
DSPMRPQVSRYYSKKRGSSHSRNGKDDANHDESKNQSPGLPLSRQSLSSSATHTYHTGGF
Sbjct: 17 DSPMRPQVSRYYSKKRGSSHSRNGKDDANHDESKNQSPGLPLSRQSLSSSATHTYHTGGF 76
Query: 77 YEIDHEKLPPKSPIHLKSIRVVKVSGYTSLDVTVXXXXXXXXXXXXXXXXXXCTGPELDE 136
YEIDHEKLPPKSPIHLKSIRVVKVSGYTSLDVTV CTGPELDE
Sbjct: 77 YEIDHEKLPPKSPIHLKSIRVVKVSGYTSLDVTVSFPSLLALRSFFSSSPRSCTGPELDE 136
Query: 137 RFVMSSNHAARILRRRVAEEELAGDVMHQDSFWLVKPCLYDFSASSPHDVLTXXXXXXXX 196
RFVMSSNHAARILRRRVAEEELAGDVMHQDSFWLVKPCLYDFSASSPHDVLT
Sbjct: 137 RFVMSSNHAARILRRRVAEEELAGDVMHQDSFWLVKPCLYDFSASSPHDVLTPSPPPATA 196
Query: 197 XXXXXXXXXCLLDTLKCDGAGWGVRRRVRYIGRHHDASKEASAASLDGYNTEVSVXXXXX 256
CLLDTLKCDGAGWGVRRRVRYIGRHHDASKEASAASLDGYNTEVSV
Sbjct: 197 QAKAPAASSCLLDTLKCDGAGWGVRRRVRYIGRHHDASKEASAASLDGYNTEVSVQEEQQ 256
Query: 257 XXXXXXXXXXXXXXXXDNKSTSNGKRKREEAESSMDXXXXXXXXXXXXXXXXXXXXXXXX 316
DNKSTSNGKRKREEAESSMD
Sbjct: 257 QRLRLRLRLRQRREQEDNKSTSNGKRKREEAESSMDKSRAARKKKAKTYKSPKKVEKRRV 316
Query: 317 XXAKDGDPRRGKDRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGL 376
AKDGDPRRGKDRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGL
Sbjct: 317 VEAKDGDPRRGKDRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGL 376
Query: 377 LDHLLKHMAGRVPEGSADRFRRRHNADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWK 436
LDHLLKHMAGRVPEGSADRFRRRHNADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWK
Sbjct: 377 LDHLLKHMAGRVPEGSADRFRRRHNADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWK 436
Query: 437 PGDDVSAVAGDXXXXXXXXXXXXXXDGVKRHIEQLSSNLVQLEKETKSEAERSYSSRKEK 496
PGDDVSAVAGD DGVKRHIEQLSSNLVQLEKETKSEAERSYSSRKEK
Sbjct: 437 PGDDVSAVAGDLLVKKKVEELAEEVDGVKRHIEQLSSNLVQLEKETKSEAERSYSSRKEK 496
Query: 497 YQKLMKANEKLEKQVLSMKDMYEHLVQKKGKLKKEVLSLKDKYKLVLEKNDKLEEQMASL 556
YQKLMKANEKLEKQVLSMKDMYEHLVQKKGKLKKEVLSLKDKYKLVLEKNDKLEEQMASL
Sbjct: 497 YQKLMKANEKLEKQVLSMKDMYEHLVQKKGKLKKEVLSLKDKYKLVLEKNDKLEEQMASL 556
Query: 557 SSSFLSLKEQLLLPRNGDNLNMERERVEVTLGKQEGLVPGEPLYVDGGDRISQQADATVV 616
SSSFLSLKEQLLLPRNGDNLNMERERVEVTLGKQEGLVPGEPLYVDGGDRISQQADATVV
Sbjct: 557 SSSFLSLKEQLLLPRNGDNLNMERERVEVTLGKQEGLVPGEPLYVDGGDRISQQADATVV 616
Query: 617 QVGEKRTARKSSFRICKPQGTFMWPHMASGTSMAISGGGSSSCPVASGPEQLXXXXXXXX 676
QVGEKRTARKSSFRICKPQGTFMWPHMASGTSMAISGGGSSSCPVASGPEQL
Sbjct: 617 QVGEKRTARKSSFRICKPQGTFMWPHMASGTSMAISGGGSSSCPVASGPEQLPRSSSCPS 676
Query: 677 XXXXXXXXXXRAPAEVVVASPLDEHVAFRGGFNXXXXXXXXXXXXXXXXXXXXXXXXXXQ 736
RAPAEVVVASPLDEHVAFRGGFN Q
Sbjct: 677 IGPGGLPPSSRAPAEVVVASPLDEHVAFRGGFNTPPSASSTNAAAAAKLPPLPSPTSPLQ 736
Query: 737 TRALFAAGFTVPALHNFSGLTLRHVDSSSPSSAPCGAREKMVTLFDGDCRGISVVGTELA 796
TRALFAAGFTVPALHNFSGLTLRHVDSSSPSSAPCGAREKMVTLFDGDCRGISVVGTELA
Sbjct: 737 TRALFAAGFTVPALHNFSGLTLRHVDSSSPSSAPCGAREKMVTLFDGDCRGISVVGTELA 796
Query: 797 LATPSYC 803
LATPSYC
Sbjct: 797 LATPSYC 803
>Os12g0623300
Length = 637
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 204/335 (60%), Gaps = 31/335 (9%)
Query: 329 DRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGLLDHLLKHMAGRV 388
DRW A RYA AE SLL IMR+ GA G PV R ALREEAR HIGDTGLLDHLL+H+A +V
Sbjct: 218 DRWKATRYATAEASLLAIMRARGARAGKPVPRGALREEARAHIGDTGLLDHLLRHIADKV 277
Query: 389 PEGSADRFRRRHNADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWKPGDDVSAVAGDX 448
G A+RFRRRHNA G +EYWLEPAELA VRR AGV+DPYWVPPPGWKPGD VS
Sbjct: 278 APGGAERFRRRHNAGGGLEYWLEPAELAAVRRNAGVADPYWVPPPGWKPGDPVSPEGYLL 337
Query: 449 XXXXXXXXXXXXXDGVKRHIEQLSSNLVQLEKETKSEAERSYSSRKEKYQKLMKANEKLE 508
GV+RH++ LSSN+ Q+ KE KSEAE+SY++ +EKY + KAN LE
Sbjct: 338 EVRKQVEKLAVELAGVRRHMDHLSSNVSQVGKEIKSEAEKSYNTCQEKYACMEKANGNLE 397
Query: 509 KQVLSMKDMYEHLVQKKGKLKKEVLSLKDKYKLVLEKNDKLEEQMASLSSSF-------- 560
KQ+LS+++ YE+ G+LK+E+L LK+K+ V+E N +LE Q+ +LS+SF
Sbjct: 398 KQLLSLEEKYENATHANGELKEELLFLKEKFVSVVENNTRLEHQLTALSTSFLSLKEELL 457
Query: 561 --------LSLKEQLLLPRNGDNLNMERERVEVTLGKQ--EGLVPGEPLYVDGGD----R 606
L +KE P D+ E+ E GK+ + V G D D
Sbjct: 458 WLEKEEADLYVKE----PWEDDD-----EKQEHDAGKEAKDDDVAGVSAANDQPDVDGDG 508
Query: 607 ISQQADATVVQVGEKRTARKSSFRICKPQGTFMWP 641
+ + KRT+RK S RI KPQG F WP
Sbjct: 509 TTTTTTTSSNGGSGKRTSRKCSVRISKPQGAFQWP 543
>Os12g0623200
Length = 418
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 120/164 (73%)
Query: 329 DRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGLLDHLLKHMAGRV 388
DRW A RYA AE SLL IMR+HGA G PV R ALREEAR HIGDTGLLDHLL+H+A +V
Sbjct: 208 DRWKATRYATAEASLLAIMRAHGARAGKPVPRAALREEARAHIGDTGLLDHLLRHIADKV 267
Query: 389 PEGSADRFRRRHNADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWKPGDDVSAVAGDX 448
G A+RFRRRHNA G +EYWLEPAELA VRR AGV+DPYWVPPPGWKPGD VS
Sbjct: 268 APGGAERFRRRHNAGGGLEYWLEPAELAAVRRKAGVADPYWVPPPGWKPGDPVSPEGYLL 327
Query: 449 XXXXXXXXXXXXXDGVKRHIEQLSSNLVQLEKETKSEAERSYSS 492
GV+RH++ L+SN+ Q+ KE KSEAE+SY++
Sbjct: 328 EVRKQVEQLAVELAGVRRHMDHLTSNVSQVGKEIKSEAEKSYNT 371
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,556,991
Number of extensions: 908665
Number of successful extensions: 2856
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2839
Number of HSP's successfully gapped: 3
Length of query: 803
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 694
Effective length of database: 11,344,475
Effective search space: 7873065650
Effective search space used: 7873065650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)