Os03g0643100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os03g0643100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.55 | 0.683 | 3.37 | -1.27 | 0.311 | 0.793 | -0.325 | -2.74 | 0.614 | 23.5 | 25.9 | 1309 | -- | -- |
| 212.99 | 0.68 | 3.32 | -0.613 | 0.336 | 0.556 | -0.28 | -- | 0.617 | 0.482 | 25.76 | 8194 | -- | -- |
| 211.92 | 0.678 | 3.38 | -1.29 | 0.322 | 0.8 | -- | -2.91 | 0.606 | 24 | 25.97 | 1304 | -- | -- |
| 213.26 | 0.68 | 3.32 | -0.581 | 0.337 | 0.534 | -- | -- | 0.629 | 0.191 | 25.81 | 8195 | -- | -- |
| 216.14 | 0.685 | 3.37 | -1.28 | -- | 0.999 | -- | -3.38 | 0.602 | -- | 25.6 | 1067 | -- | -- |
| 224.51 | 0.702 | 3.28 | -0.386 | 0.386 | -- | -0.258 | -- | 0.812 | 24 | -- | -- | -- | -- |
| 224.77 | 0.702 | 3.28 | -0.376 | 0.388 | -- | -- | -- | 0.813 | 0.235 | -- | -- | -- | -- |
| 219.19 | 0.69 | 3.3 | -0.585 | -- | 0.692 | -- | -- | 0.702 | -- | 23.94 | 1095 | -- | -- |
| 220.63 | 0.692 | 3.29 | -- | 0.349 | 0.442 | -- | -- | 0.741 | 0.556 | 28.4 | 8031 | -- | -- |
| 234.24 | 0.715 | 3.27 | -0.364 | -- | -- | -- | -- | 0.819 | -- | -- | -- | -- | -- |
| 228.5 | 0.707 | 3.27 | -- | 0.383 | -- | -- | -- | 0.855 | 0.183 | -- | -- | -- | -- |
| 226.85 | 0.701 | 3.27 | -- | -- | 0.541 | -- | -- | 0.827 | -- | 25.09 | 1102 | -- | -- |
| 237.73 | 0.72 | 3.26 | -- | -- | -- | -- | -- | 0.859 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.85 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 12 | 206.13 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 29 | 207.29 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 32 | 207.74 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 42 | 207.92 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 79 | 208.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 80 | 208.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 82 | 208.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 131 | 208.76 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 132 | 208.76 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 138 | 208.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 139 | 208.91 | wind | 7 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 143 | 208.99 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 152 | 209.03 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 158 | 209.07 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 160 | 209.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 162 | 209.09 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 167 | 209.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 168 | 209.11 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 173 | 209.14 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 185 | 209.17 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 188 | 209.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 198 | 209.19 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 201 | 209.20 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 8 |
| 210 | 209.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 283 | 209.37 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 303 | 209.40 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 345 | 209.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 364 | 209.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 367 | 209.49 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 410 | 209.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 432 | 209.55 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 439 | 209.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 476 | 209.58 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 478 | 209.58 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 513 | 209.61 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 530 | 209.62 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 543 | 209.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 15 |
| 572 | 209.65 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 582 | 209.66 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 618 | 209.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 765 | 209.77 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 2 |
| 802 | 209.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 857 | 209.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |