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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0622500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.37 (0.0303) R2 : 0.43
β1 : 1.37 (0.113) R2dD : 0.201 R2D : -0.0715
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.44 (0.128) R2dE : 0.179 R2E : -0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.0669) R2dN8 : 0.443 R2N8 : 0.122
σ : 0.561
deviance : 145.07
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.2
memory length : 251
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.83 0.546 5.33 1.71 0.232 -1.25 -0.81 2.25 1.12 5.37 19.77 251 -- --
137.87 0.547 5.37 1.36 0.286 -1.16 -1.39 -- 1.02 4.94 18.2 273 -- --
135.82 0.543 5.31 1.83 0.247 -1.29 -- 2.86 1.16 6.52 19.74 222 -- --
142.27 0.556 5.38 1.27 0.291 -1.15 -- -- 0.983 5.88 17.33 226 -- --
137.94 0.547 5.31 1.92 -- -1.45 -- 3.14 1.2 -- 20.22 259 -- --
159.04 0.591 5.42 1.02 0.669 -- -1.13 -- 0.801 4.95 -- -- -- --
162.27 0.597 5.41 1.03 0.664 -- -- -- 0.806 5.09 -- -- -- --
145.07 0.561 5.37 1.37 -- -1.44 -- -- 1.04 -- 17.2 251 -- --
182.22 0.629 5.41 -- 0.44 -0.675 -- -- 0.797 5.74 20.3 165 -- --
185.35 0.636 5.42 1.05 -- -- -- -- 0.823 -- -- -- -- --
190.03 0.645 5.44 -- 0.682 -- -- -- 0.692 5.04 -- -- -- --
188.69 0.64 5.42 -- -- -0.946 -- -- 0.809 -- 23.2 251 -- --
214.44 0.684 5.45 -- -- -- -- -- 0.707 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.29 precipitation 0.1 43200 < th dose independent rect. 17 1
2 131.29 precipitation 0.1 43200 < th dose dependent rect. 17 1
3 131.40 precipitation 0.1 43200 > th dose independent rect. 17 1
4 131.85 humidity 90.0 14400 < th dose independent rect. 21 2
7 132.69 humidity 80.0 14400 > th dose independent rect. 17 1
8 132.81 humidity 90.0 14400 < th dose independent rect. 17 9
10 132.92 humidity 90.0 14400 > th dose independent rect. 21 2
18 133.19 humidity 90.0 14400 > th dose independent rect. 18 9
19 133.21 humidity 90.0 14400 > th dose independent rect. 19 7
22 133.24 precipitation 0.1 43200 > th dose dependent rect. 17 1
32 133.42 humidity 90.0 14400 < th dose independent rect. 17 15
43 133.53 humidity 80.0 14400 > th dose dependent rect. 18 1
46 133.60 humidity 80.0 14400 < th dose independent rect. 17 1
64 133.78 humidity 90.0 14400 < th dose independent sin 14 NA
92 134.03 temperature 20.0 90 > th dose dependent rect. 7 23
93 134.04 humidity 90.0 14400 > th dose independent sin 14 NA
102 134.11 humidity 90.0 14400 > th dose dependent rect. 21 4
123 134.20 humidity 80.0 14400 > th dose dependent rect. 17 6
126 134.22 humidity 80.0 14400 > th dose dependent rect. 21 1
134 134.26 humidity 80.0 14400 > th dose dependent rect. 17 9
135 134.27 wind 9.0 43200 > th dose dependent rect. 19 12
139 134.31 humidity 90.0 14400 > th dose independent rect. 17 15
145 134.33 wind 9.0 43200 > th dose dependent rect. 19 2
164 134.43 wind 9.0 43200 > th dose dependent rect. 19 6
183 134.50 humidity 90.0 14400 > th dose independent rect. 17 17
186 134.52 humidity 80.0 14400 < th dose independent rect. 13 6
296 134.95 humidity 80.0 14400 > th dose independent rect. 12 8
301 134.96 temperature 20.0 270 > th dose dependent no NA NA
307 134.97 temperature 20.0 270 > th dose dependent rect. 24 23
341 135.08 humidity 80.0 14400 > th dose dependent rect. 17 18
342 135.08 temperature 20.0 270 > th dose dependent rect. 4 23
349 135.10 humidity 80.0 14400 > th dose dependent sin 16 NA
351 135.11 humidity 90.0 14400 < th dose independent rect. 24 23
373 135.19 humidity 90.0 14400 < th dose independent rect. 7 23
382 135.20 temperature 30.0 90 < th dose dependent rect. 5 22
389 135.23 temperature 20.0 270 > th dose dependent rect. 18 23
392 135.24 humidity 90.0 14400 < th dose independent rect. 5 22
396 135.25 radiation 20.0 4320 < th dose independent rect. 15 17
397 135.25 humidity 90.0 14400 < th dose independent rect. 7 20
463 135.37 temperature 20.0 270 > th dose dependent rect. 15 23
470 135.39 humidity 90.0 14400 < th dose independent no NA NA
478 135.40 radiation 1.0 14400 > th dose independent rect. 5 1
501 135.44 humidity 90.0 14400 > th dose independent rect. 9 18
517 135.47 radiation 1.0 14400 < th dose independent rect. 5 1
527 135.48 temperature 30.0 270 < th dose dependent rect. 3 22
542 135.52 wind 9.0 43200 < th dose independent rect. 19 20
565 135.56 wind 9.0 43200 > th dose independent rect. 19 2
575 135.57 humidity 90.0 14400 < th dose independent rect. 20 23
585 135.60 humidity 80.0 14400 > th dose dependent rect. 9 18
588 135.61 humidity 80.0 14400 > th dose dependent rect. 10 16
594 135.61 humidity 80.0 14400 > th dose dependent rect. 8 21
603 135.63 humidity 80.0 14400 > th dose dependent rect. 1 22
608 135.64 wind 3.0 43200 > th dose dependent rect. 6 1
621 135.67 humidity 80.0 43200 < th dose independent rect. 5 3
629 135.68 humidity 80.0 14400 > th dose independent rect. 8 11
641 135.69 wind 9.0 43200 > th dose dependent rect. 17 15
661 135.71 temperature 20.0 270 > th dose dependent rect. 12 23
675 135.74 wind 9.0 43200 > th dose independent rect. 19 6
676 135.74 wind 9.0 43200 > th dose independent rect. 19 13
695 135.77 radiation 1.0 14400 > th dose independent rect. 18 12
711 135.80 humidity 90.0 14400 > th dose independent rect. 9 23
734 135.83 wind 9.0 43200 > th dose independent rect. 19 20
751 135.85 humidity 80.0 14400 > th dose dependent rect. 4 22
768 135.88 humidity 90.0 14400 > th dose independent rect. 4 23
770 135.88 humidity 90.0 14400 > th dose independent rect. 24 23
806 135.94 radiation 1.0 14400 < th dose independent rect. 18 12
808 135.94 humidity 80.0 14400 > th dose dependent no NA NA
813 135.95 wind 9.0 43200 < th dose independent rect. 19 2
818 135.96 humidity 90.0 14400 > th dose independent no NA NA
833 135.98 humidity 80.0 14400 < th dose independent rect. 8 11
872 136.03 humidity 80.0 14400 > th dose dependent rect. 21 23
981 136.23 radiation 1.0 14400 < th dose independent rect. 24 6
987 136.23 wind 7.0 43200 > th dose dependent rect. 19 20
988 136.24 humidity 80.0 43200 > th dose independent rect. 5 2