BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0622500 Os03g0622500|AK073006
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375 78 1e-15
AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325 75 7e-15
AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149 67 2e-12
>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
Length = 374
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 5 VSVEEHIAIFLYTVAKNATNETLQDWFQHSPDTIHRYFKAVQEAITNLTSVYIRAPSLHP 64
+ +E +AIFL+ + N +Q+ F +S +TI R+F V A+ ++ + + P+ +
Sbjct: 72 IKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ-PNSNS 130
Query: 65 HPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQESYRNRKQTISQNCMVACDFDLKFVH 124
+ P+F++C+G +D HIP+ + +DEQ +RN ++QN + A FDL+F +
Sbjct: 131 DTLENDD---PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNY 187
Query: 125 I 125
+
Sbjct: 188 V 188
>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
Length = 324
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 2 VLYVSVEEHIAIFLYTVAKNATNETLQDWFQHSPDTIHRYFKAVQEAITNLTSVYIRAPS 61
L +S+EE +A+FL N + F + +T+ R F+ V A L YIR P+
Sbjct: 93 TLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPT 152
Query: 62 LH-----PHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQESYRNRKQTISQNCMVAC 116
P + +++P+F +GA+DGTH+ +K+ D Q Y NR S N M C
Sbjct: 153 RQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAIC 212
Query: 117 DFDLKFVHI 125
D + F +I
Sbjct: 213 DLKMLFTYI 221
>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
Length = 148
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 64 PHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQESYRNRKQTISQNCMVACDFDLKFV 123
P I + YP+F++C+GAID THI + + S+RNRK ISQN + AC+FD++F+
Sbjct: 9 PRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFM 68
Query: 124 HI 125
++
Sbjct: 69 YV 70
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,754,774
Number of extensions: 109236
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)