Os03g0584300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0136, Transmembrane family protein.
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Os03g0584300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0136, Transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.82 | 0.345 | 7.88 | -1.58 | 1.13 | -1.35 | -0.147 | 0.184 | -0.244 | 23.5 | 80.23 | 1467 | -- | -- |
| 53.85 | 0.342 | 7.88 | -1.57 | 1.12 | -1.34 | -0.14 | -- | -0.241 | 23.5 | 81 | 1467 | -- | -- |
| 53.92 | 0.342 | 7.88 | -1.58 | 1.13 | -1.35 | -- | 0.153 | -0.243 | 23.5 | 80.32 | 1467 | -- | -- |
| 53.93 | 0.342 | 7.88 | -1.56 | 1.12 | -1.34 | -- | -- | -0.24 | 23.5 | 80.91 | 1467 | -- | -- |
| 81.89 | 0.421 | 7.85 | -1.69 | -- | -1.66 | -- | 0.662 | -0.232 | -- | 79 | 980 | -- | -- |
| 75.32 | 0.407 | 7.86 | -1.54 | 1.09 | -- | -0.0405 | -- | -0.165 | 23.5 | -- | -- | -- | -- |
| 75.33 | 0.406 | 7.86 | -1.54 | 1.09 | -- | -- | -- | -0.165 | 23.5 | -- | -- | -- | -- |
| 81.05 | 0.419 | 7.86 | -1.56 | -- | -1.61 | -- | -- | -0.239 | -- | 80 | 972 | -- | -- |
| 111.47 | 0.492 | 7.86 | -- | 1.12 | -1.29 | -- | -- | -0.148 | 23.5 | 87.94 | 1581 | -- | -- |
| 149.52 | 0.571 | 7.84 | -1.51 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 138.08 | 0.55 | 7.83 | -- | 1.07 | -- | -- | -- | 0.00668 | 23.4 | -- | -- | -- | -- |
| 138.73 | 0.549 | 7.86 | -- | -- | -1.59 | -- | -- | -0.269 | -- | 86 | 948 | -- | -- |
| 209.95 | 0.676 | 7.8 | -- | -- | -- | -- | -- | 0.0146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 2 | 52.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 7 | 52.64 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 10 | 52.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 16 | 52.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 34 | 53.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 35 | 53.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 38 | 53.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 68 | 53.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 79 | 53.29 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 89 | 53.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 111 | 53.46 | humidity | 70 | 1440 | > th | dose dependent | sin | 18 | NA |
| 152 | 53.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 163 | 53.69 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 180 | 53.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 221 | 53.87 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 233 | 53.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 341 | 54.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 387 | 54.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 447 | 54.44 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 468 | 54.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 542 | 54.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 563 | 54.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 580 | 54.82 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 595 | 54.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 664 | 55.06 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 703 | 55.16 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 739 | 55.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 931 | 55.76 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 966 | 55.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 985 | 55.89 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |