BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0584300 Os03g0584300|AK105133
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20510.1  | chr3:7160884-7161991 FORWARD LENGTH=120             74   2e-14
AT1G50740.1  | chr1:18807861-18808765 FORWARD LENGTH=120           72   7e-14

>AT3G20510.1 | chr3:7160884-7161991 FORWARD LENGTH=120
          Length = 119

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 60  SLFAAVLQTVCAVALTVVMGIRYIKTRKVMPAGIIAAVSALVLIFYIYKISNGGNKVYVP 119
           S  A VLQTV A ALT+VMG RY+ T K+MPAG++A +SAL+  FY+YKI+ GGNK   P
Sbjct: 58  STIAMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNK--FP 115

Query: 120 VSAE 123
             AE
Sbjct: 116 AKAE 119



>AT1G50740.1 | chr1:18807861-18808765 FORWARD LENGTH=120
          Length = 119

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 49/64 (76%), Gaps = 2/64 (3%)

Query: 60  SLFAAVLQTVCAVALTVVMGIRYIKTRKVMPAGIIAAVSALVLIFYIYKISNGGNKVYVP 119
           SL A +L+TV A ALT VMG R+++T+K+MPA ++A +SAL+  FY+YKI+ GGN  ++P
Sbjct: 58  SLLATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGN--HIP 115

Query: 120 VSAE 123
             AE
Sbjct: 116 PKAE 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,474,102
Number of extensions: 34800
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)