Os03g0577100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuf2 family protein.
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Os03g0577100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuf2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.27 | 0.54 | 3.39 | -1.21 | 0.304 | 0.453 | -0.822 | -2.81 | -0.0703 | 5.3 | 25.65 | 954 | -- | -- |
| 138.51 | 0.548 | 3.3 | -0.557 | 0.316 | 0.375 | -0.887 | -- | 0.184 | 3.31 | 20.85 | 1605 | -- | -- |
| 133.87 | 0.539 | 3.39 | -1.23 | 0.285 | 0.456 | -- | -2.86 | -0.0724 | 5.13 | 25.68 | 995 | -- | -- |
| 140.87 | 0.553 | 3.3 | -0.523 | 0.322 | 0.379 | -- | -- | 0.191 | 3.51 | 20.9 | 1565 | -- | -- |
| 137.94 | 0.547 | 3.4 | -1.25 | -- | 0.494 | -- | -2.92 | -0.0822 | -- | 25.7 | 1032 | -- | -- |
| 141.74 | 0.558 | 3.28 | -0.381 | 0.326 | -- | -0.899 | -- | 0.277 | 3.4 | -- | -- | -- | -- |
| 144.28 | 0.562 | 3.28 | -0.365 | 0.323 | -- | -- | -- | 0.282 | 3.55 | -- | -- | -- | -- |
| 146.4 | 0.564 | 3.3 | -0.518 | -- | 0.407 | -- | -- | 0.197 | -- | 20.6 | 1411 | -- | -- |
| 145.95 | 0.566 | 3.28 | -- | 0.362 | 0.196 | -- | -- | 0.286 | 3.21 | 20.9 | 1565 | -- | -- |
| 150.1 | 0.572 | 3.28 | -0.351 | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
| 147.78 | 0.569 | 3.27 | -- | 0.316 | -- | -- | -- | 0.323 | 3.55 | -- | -- | -- | -- |
| 152.06 | 0.574 | 3.28 | -- | -- | 0.174 | -- | -- | 0.277 | -- | 22.4 | 1421 | -- | -- |
| 153.35 | 0.578 | 3.27 | -- | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.63 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 2 | 125.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 6 | 125.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 31 | 126.93 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 39 | 127.15 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 12 |
| 47 | 127.49 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 64 | 127.89 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 75 | 128.13 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 80 | 128.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 112 | 128.67 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 119 | 128.72 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 142 | 128.97 | temperature | 25.0 | 720 | > th | dose independent | sin | 16 | NA |
| 150 | 129.02 | temperature | 25.0 | 270 | < th | dose independent | sin | 13 | NA |
| 196 | 129.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 198 | 129.40 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 200 | 129.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 201 | 129.41 | temperature | 25.0 | 720 | < th | dose independent | sin | 15 | NA |
| 302 | 129.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 386 | 130.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 387 | 130.47 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 497 | 130.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 572 | 131.38 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 579 | 131.41 | humidity | 90.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 583 | 131.42 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 586 | 131.44 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 626 | 131.58 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 631 | 131.58 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 671 | 131.70 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 680 | 131.72 | humidity | 50.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 705 | 131.79 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 706 | 131.79 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 707 | 131.80 | humidity | 90.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 714 | 131.81 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 727 | 131.82 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 19 | NA |
| 728 | 131.82 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 730 | 131.83 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 740 | 131.84 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 17 |
| 743 | 131.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 747 | 131.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 751 | 131.86 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 752 | 131.86 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 757 | 131.87 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 774 | 131.89 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 821 | 131.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 849 | 131.98 | radiation | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 854 | 131.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 861 | 131.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 881 | 132.00 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 887 | 132.01 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 899 | 132.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 912 | 132.03 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 916 | 132.03 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 918 | 132.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 931 | 132.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 941 | 132.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 956 | 132.06 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 0 | NA |
| 968 | 132.07 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 972 | 132.08 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 10 |