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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0432100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Orthophosphate dikinase precursor (EC 2.7.9.1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.1 (0.0533) R2 : 0.61
β1 : -2.04 (0.194) R2dD : 0.107 R2D : 0.0742
β2 : 9.84 (0.541) R2dC : 4.76 R2C : -5.39
β3 : -13 (0.643) R2dE : 5.82 R2E : -4.37
β4 : 12.7 (1.79) R2dD*C : 0.385 R2D*C : -0.187
β5 : -9.56 (2.18) R2dD*E : 0.146 R2D*E : -0.404
γ1 : -0.527 (0.112) R2dN8 : 0.0271 R2N8 : -0.0105
σ : 0.958
deviance : 415.59
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_____
C
peak time of C : 18.6
E
wheather : radiation
threshold : 1.013
memory length : 723
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.61
open length of G : 23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
415.59 0.958 5.1 -2.04 9.84 -13 12.7 -9.56 -0.527 18.6 1.013 723 7.61 23
490.02 1.03 4.94 -1.82 8.7 -12.2 9.56 -- -0.324 18.5 1.004 730 8.17 23.4
468.95 1.01 5.02 -1.83 8.89 -12.6 -- 5.41 -0.395 18.6 1.469 748 7.62 23.7
486.54 1.03 5.06 -1.71 8.6 -12.2 -- -- -0.36 19.4 1.4 800 7.81 23
768.14 1.3 4.88 -2.64 -- -0.86 -- -0.914 -0.773 -- 1.401 1555 8.23 23.5
724.76 1.26 4.9 -2.72 1.51 -- -0.54 -- -0.875 2.82 -- -- -- --
725.41 1.26 4.9 -2.7 1.51 -- -- -- -0.871 2.62 -- -- -- --
631.54 1.17 5.05 -2.63 -- -1.99 -- -- -1.2 -- 1.66 1725 13.9 24
574.94 1.12 5.03 -- 8.51 -12.3 -- -- -0.243 19.3 1.05 802 7.87 23
857.92 1.37 4.89 -2.64 -- -- -- -- -0.833 -- -- -- -- --
917.92 1.42 4.83 -- 1.45 -- -- -- -0.57 2.6 -- -- -- --
637.84 1.18 4.72 -- -- -4.48 -- -- -0.0988 -- 1.087 1512 18.5 24
1041.57 1.51 4.83 -- -- -- -- -- -0.54 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 425.34 radiation 1 720 > th dose independent rect. 8 23
5 442.89 radiation 1 720 > th dose independent rect. 15 23
6 444.82 radiation 1 720 > th dose independent sin 23 NA
9 447.22 radiation 1 720 < th dose independent rect. 3 23
10 448.15 radiation 1 720 < th dose dependent rect. 3 23
11 448.36 radiation 1 720 < th dose dependent rect. 5 14
12 448.37 radiation 1 720 < th dose independent rect. 8 23
13 448.43 radiation 1 720 < th dose independent rect. 20 23
15 449.08 radiation 1 720 > th dose independent rect. 5 14
25 449.31 radiation 1 720 > th dose independent no NA NA
74 450.90 radiation 1 720 < th dose dependent rect. 20 23
79 454.14 radiation 1 720 < th dose independent rect. 5 23
82 455.35 radiation 1 720 < th dose independent sin 14 NA
86 456.39 radiation 1 720 < th dose independent rect. 5 14
87 456.46 radiation 1 1440 < th dose dependent rect. 5 12
90 457.28 radiation 1 720 < th dose independent no NA NA
91 457.31 radiation 1 720 < th dose independent rect. 12 23
98 457.81 radiation 1 720 < th dose dependent rect. 5 22
107 459.19 radiation 1 720 < th dose dependent sin 14 NA
114 459.79 radiation 1 1440 < th dose dependent rect. 18 23
115 459.93 radiation 1 1440 < th dose dependent rect. 20 21
119 460.65 radiation 1 1440 < th dose dependent rect. 22 19
123 461.21 radiation 1 1440 < th dose dependent rect. 24 17
125 461.55 radiation 1 1440 < th dose dependent rect. 2 15
133 462.62 radiation 1 720 < th dose dependent rect. 9 22
142 463.80 radiation 1 720 < th dose dependent rect. 12 19
146 464.26 humidity 70 720 > th dose dependent rect. 8 15
156 464.87 radiation 1 720 < th dose dependent no NA NA
171 466.48 radiation 1 720 > th dose independent sin 14 NA
223 471.52 radiation 1 720 > th dose independent rect. 13 23
231 472.11 radiation 1 720 > th dose independent rect. 17 14
235 472.23 temperature 25 14400 < th dose independent rect. 11 16
237 472.35 temperature 25 14400 > th dose independent rect. 16 9
238 472.40 temperature 25 14400 < th dose independent rect. 16 5
239 472.40 temperature 25 14400 < th dose independent rect. 16 9
243 472.53 temperature 25 14400 < th dose independent rect. 16 11
244 472.58 temperature 25 14400 < th dose independent sin 16 NA
248 472.61 temperature 25 14400 > th dose independent rect. 16 5
252 472.73 radiation 1 720 < th dose independent sin 23 NA
253 472.80 temperature 25 14400 > th dose independent sin 16 NA
270 472.99 temperature 25 14400 > th dose independent rect. 11 16
346 473.93 temperature 25 4320 > th dose independent rect. 8 3
380 474.40 humidity 80 720 > th dose independent rect. 8 14
403 474.65 temperature 25 14400 < th dose independent rect. 16 21
410 474.76 temperature 25 4320 < th dose independent rect. 8 3
426 474.96 temperature 25 14400 > th dose independent rect. 16 22
462 475.26 temperature 25 14400 < th dose independent rect. 11 23
464 475.27 temperature 25 14400 > th dose dependent rect. 11 1
465 475.29 radiation 1 720 > th dose independent rect. 7 12
480 475.37 temperature 25 14400 < th dose independent no NA NA
501 475.49 temperature 25 14400 < th dose independent rect. 22 23
505 475.51 temperature 25 14400 > th dose independent rect. 2 23
506 475.51 temperature 25 14400 < th dose independent rect. 2 23
511 475.57 temperature 25 14400 > th dose independent rect. 11 23
512 475.58 temperature 25 14400 > th dose independent no NA NA
534 475.79 temperature 25 14400 > th dose independent rect. 22 23
539 475.86 temperature 25 14400 < th dose independent rect. 20 23
545 475.88 radiation 1 1440 < th dose dependent sin 2 NA
593 476.23 temperature 20 14400 > th dose dependent rect. 2 1
631 476.65 radiation 1 720 < th dose independent rect. 1 23
654 476.80 temperature 25 4320 < th dose independent rect. 9 1
716 477.37 temperature 20 14400 > th dose dependent rect. 19 9
763 477.79 temperature 20 14400 > th dose dependent rect. 21 7
799 477.95 temperature 30 14400 < th dose dependent rect. 2 1
808 478.03 temperature 10 14400 > th dose dependent rect. 2 1
813 478.07 humidity 80 1440 < th dose independent rect. 7 7
844 478.30 temperature 20 14400 > th dose dependent sin 13 NA
902 478.62 temperature 25 14400 > th dose dependent rect. 15 1
944 478.86 temperature 20 14400 > th dose dependent rect. 21 1
964 479.01 temperature 30 14400 < th dose dependent rect. 19 9
973 479.06 temperature 10 14400 > th dose dependent rect. 19 9
984 479.12 temperature 30 14400 < th dose dependent rect. 22 5
986 479.14 radiation 1 720 > th dose independent rect. 15 15
997 479.18 temperature 10 14400 > th dose dependent rect. 21 7
998 479.18 temperature 30 14400 < th dose dependent rect. 21 7