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Os03g0395000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heme oxygenase 2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0325) R2 : 0.744
β1 : 1.29 (0.118) R2dD : 0.0686 R2D : 0.065
β2 : 1.38 (0.124) R2dC : 0.151 R2C : 0.424
β3 : -1.63 (0.117) R2dE : 0.238 R2E : 0.514
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.0693) R2dN8 : 0.00488 R2N8 : 0.0157
σ : 0.604
deviance : 168.45
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C
peak time of C : 17.7
E
wheather : precipitation
threshold : 0.213
memory length : 304
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.07
open length of G : 2.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.55 0.603 10.5 1.18 1.41 -1.6 -1.39 -1.78 -0.197 17.9 0.274 297 3.06 2.43
170.18 0.608 10.5 1.27 1.52 -1.51 -0.503 -- -0.173 17.8 0.8968 292 3.2 2.45
166.63 0.601 10.5 1.24 1.4 -1.62 -- -0.84 -0.187 17.7 0.1827 298 3.11 2.43
168.45 0.604 10.5 1.29 1.38 -1.63 -- -- -0.176 17.7 0.213 304 3.07 2.5
202.66 0.663 10.5 1.28 -- -2.5 -- -0.391 -0.127 -- 1.387 356 2.12 3.4
237.27 0.722 10.6 1.25 2.66 -- -0.11 -- -0.274 18 -- -- -- --
237.3 0.721 10.6 1.25 2.66 -- -- -- -0.274 18 -- -- -- --
188.26 0.639 10.5 1.27 -- -2.85 -- -- -0.0981 -- 0.4884 375 0.733 5.57
212.01 0.678 10.5 -- 1.38 -1.62 -- -- -0.289 17.6 0.4958 303 3.14 2.46
604.86 1.15 10.5 1.17 -- -- -- -- -0.335 -- -- -- -- --
278.43 0.781 10.6 -- 2.64 -- -- -- -0.414 18 -- -- -- --
232.28 0.71 10.5 -- -- -2.8 -- -- -0.247 -- 0.125 350 0.749 5.95
641.08 1.18 10.5 -- -- -- -- -- -0.465 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.55 wind 7.0 270 < th dose independent rect. 6 21
2 166.64 precipitation 0.1 270 < th dose independent rect. 3 3
3 166.64 precipitation 0.1 270 < th dose dependent rect. 3 3
5 167.72 wind 5.0 270 < th dose independent rect. 3 3
7 168.39 radiation 10.0 270 < th dose independent rect. 3 3
9 168.52 temperature 10.0 270 > th dose independent rect. 3 3
11 168.52 temperature 30.0 270 < th dose independent rect. 3 3
12 168.52 humidity 50.0 270 > th dose independent rect. 3 3
15 168.52 atmosphere 995.0 270 > th dose independent rect. 3 3
16 168.52 atmosphere 1015.0 270 < th dose independent rect. 3 3
20 168.52 temperature 10.0 270 > th dose independent rect. 6 21
21 168.73 radiation 40.0 270 < th dose dependent rect. 3 3
29 170.62 temperature 15.0 270 > th dose independent rect. 14 17
30 170.73 wind 7.0 270 < th dose independent rect. 7 19
31 170.85 temperature 15.0 90 > th dose dependent rect. 8 7
34 171.32 radiation 30.0 90 < th dose independent rect. 3 6
36 171.42 atmosphere 1015.0 270 < th dose dependent rect. 3 3
37 171.52 wind 9.0 270 < th dose dependent rect. 3 3
38 171.60 temperature 10.0 270 > th dose dependent rect. 3 3
39 171.65 precipitation 0.1 270 < th dose independent rect. 6 21
40 171.65 precipitation 0.1 270 < th dose dependent rect. 6 21
44 171.98 precipitation 0.1 270 < th dose independent rect. 2 5
45 171.98 precipitation 0.1 270 < th dose dependent rect. 2 5
54 172.34 wind 9.0 270 < th dose dependent rect. 7 19
55 172.61 temperature 30.0 90 < th dose independent rect. 3 6
65 173.14 humidity 70.0 90 > th dose independent rect. 3 6
73 173.36 temperature 10.0 270 > th dose independent rect. 2 5
76 173.36 humidity 50.0 270 > th dose independent rect. 2 5
78 173.36 atmosphere 995.0 270 > th dose independent rect. 2 5
79 173.36 atmosphere 1015.0 270 < th dose independent rect. 2 5
82 173.36 temperature 10.0 270 > th dose independent rect. 7 19
99 173.50 humidity 50.0 270 > th dose dependent rect. 3 3
125 174.19 wind 9.0 270 < th dose dependent rect. 6 21
137 174.36 wind 5.0 270 < th dose independent rect. 4 1
152 174.59 temperature 20.0 10 > th dose dependent rect. 9 5
191 174.95 precipitation 0.1 270 < th dose independent rect. 7 19
192 174.95 precipitation 0.1 270 < th dose dependent rect. 7 19
225 175.38 atmosphere 1015.0 30 < th dose dependent rect. 4 5
227 175.41 wind 7.0 270 < th dose independent rect. 19 8
233 175.63 temperature 20.0 270 > th dose dependent rect. 9 1
234 175.66 temperature 20.0 270 > th dose dependent rect. 8 3
278 176.49 temperature 15.0 270 > th dose independent rect. 12 10
291 176.70 precipitation 0.1 270 < th dose independent rect. 3 16
292 176.70 precipitation 0.1 270 < th dose dependent rect. 3 16
303 176.75 atmosphere 995.0 270 > th dose independent rect. 6 21
321 177.09 wind 9.0 270 < th dose independent rect. 7 7
353 177.32 precipitation 0.1 270 < th dose independent rect. 14 17
356 177.32 precipitation 0.1 270 < th dose dependent rect. 14 17
413 177.62 temperature 10.0 270 > th dose independent rect. 7 7
414 177.62 atmosphere 995.0 270 > th dose independent rect. 7 7
415 177.62 atmosphere 1015.0 270 < th dose independent rect. 7 7
430 177.72 precipitation 0.1 270 < th dose independent rect. 7 7
432 177.72 precipitation 0.1 270 < th dose dependent rect. 7 7
433 177.73 humidity 60.0 270 > th dose independent rect. 19 8
437 177.74 temperature 10.0 270 > th dose independent rect. 19 8
438 177.74 temperature 30.0 270 < th dose independent rect. 19 8
440 177.74 atmosphere 995.0 270 > th dose independent rect. 19 8
441 177.74 radiation 1.0 270 < th dose independent rect. 19 8
446 177.74 temperature 10.0 270 > th dose independent rect. 3 16
447 177.74 atmosphere 1015.0 270 < th dose independent rect. 3 16
448 177.74 radiation 1.0 270 < th dose dependent rect. 19 8
453 177.76 radiation 40.0 270 < th dose independent rect. 15 16
475 177.93 atmosphere 995.0 270 > th dose independent rect. 7 19
487 178.14 wind 9.0 270 < th dose dependent rect. 4 1
488 178.14 temperature 10.0 270 > th dose dependent rect. 4 1
490 178.19 humidity 50.0 270 > th dose dependent rect. 4 1
492 178.19 humidity 50.0 270 > th dose dependent rect. 19 8
509 178.32 radiation 1.0 270 < th dose dependent rect. 17 10
535 178.51 radiation 1.0 270 < th dose dependent rect. 3 9
541 178.60 precipitation 0.1 270 < th dose independent rect. 19 8
543 178.60 precipitation 0.1 270 < th dose dependent rect. 19 8
546 178.65 wind 9.0 270 < th dose independent rect. 14 17
594 179.10 temperature 15.0 10 > th dose independent rect. 16 17
596 179.14 radiation 1.0 270 < th dose independent rect. 3 9
646 179.80 atmosphere 1015.0 90 < th dose dependent rect. 8 7
652 179.88 wind 9.0 270 < th dose independent rect. 3 16
670 180.18 atmosphere 1010.0 270 < th dose independent rect. 12 9
687 180.40 radiation 1.0 270 > th dose independent rect. 7 7
688 180.41 humidity 50.0 270 > th dose independent rect. 7 7
692 180.48 wind 1.0 270 > th dose independent rect. 7 7
704 180.62 wind 7.0 270 < th dose independent rect. 21 15
705 180.63 radiation 1.0 270 < th dose dependent rect. 9 18
753 181.09 humidity 50.0 270 > th dose independent rect. 7 20
794 181.43 wind 9.0 270 < th dose dependent rect. 19 7
798 181.44 temperature 10.0 270 > th dose independent rect. 21 15
799 181.44 atmosphere 995.0 270 > th dose independent rect. 21 15
802 181.44 temperature 10.0 270 > th dose dependent rect. 21 15
803 181.51 humidity 50.0 90 > th dose dependent rect. 21 7
821 181.69 humidity 50.0 270 > th dose independent rect. 21 15
830 181.79 radiation 1.0 30 > th dose independent rect. 18 14
871 182.07 wind 1.0 270 > th dose independent rect. 3 3
877 182.17 temperature 10.0 90 > th dose dependent rect. 8 19
899 182.44 atmosphere 1015.0 270 < th dose independent rect. 14 17
912 182.61 wind 9.0 90 < th dose dependent rect. 21 7
914 182.62 temperature 15.0 270 > th dose independent rect. 1 21
916 182.63 temperature 15.0 270 > th dose independent rect. 10 23
924 182.73 temperature 10.0 1440 > th dose independent rect. 5 5
927 182.73 atmosphere 995.0 1440 > th dose independent rect. 5 5
928 182.73 atmosphere 1015.0 1440 < th dose independent rect. 5 5
929 182.73 temperature 10.0 1440 > th dose independent rect. 10 19
935 182.79 atmosphere 1015.0 10 < th dose dependent rect. 9 5
937 182.81 precipitation 0.1 270 < th dose independent rect. 12 9
939 182.81 precipitation 0.1 270 < th dose dependent rect. 12 9
948 182.86 wind 1.0 270 > th dose independent rect. 12 9
956 182.95 wind 9.0 270 < th dose dependent rect. 7 7
966 183.04 temperature 15.0 10 > th dose independent rect. 14 19
986 183.18 radiation 1.0 30 < th dose dependent sin 11 NA
987 183.18 atmosphere 995.0 90 > th dose dependent rect. 21 7
995 183.24 wind 9.0 270 < th dose independent rect. 12 9
998 183.25 radiation 40.0 10 < th dose independent rect. 4 18