BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0395000 Os03g0395000|AK073283
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26670.1 | chr2:11341816-11343394 FORWARD LENGTH=283 215 2e-56
AT2G26550.1 | chr2:11291584-11293426 REVERSE LENGTH=355 212 2e-55
AT1G69720.1 | chr1:26227178-26228419 FORWARD LENGTH=286 206 2e-53
AT1G58300.1 | chr1:21628015-21629996 REVERSE LENGTH=284 183 9e-47
>AT2G26670.1 | chr2:11341816-11343394 FORWARD LENGTH=283
Length = 282
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 152/245 (62%), Gaps = 32/245 (13%)
Query: 85 GEAVGVAEEMRFVAMRLRNPKRTTLKMDDTGAEEEVGXXXXXXXXXXXXXXXXXXXXXXX 144
GE+ G EEMRFVAMRL + +T + EE
Sbjct: 69 GESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEE------------------------- 103
Query: 145 XXXXXXXXXXXXWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARI 204
W P++EG++++LVDSKLV+DT+E I+ +S Y F+ +GLER+ ++
Sbjct: 104 -------RPVAKWEPTVEGYLRFLVDSKLVYDTLELIIQDSNFPTYAEFKNTGLERAEKL 156
Query: 205 TKDLEWFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNK 264
+ DLEWF QG +PEP+ G TY+ YL ELAE + AF+ H+YNIYFAH+ GG IG K
Sbjct: 157 STDLEWFKEQGYEIPEPTAPGKTYSQYLKELAEKDPQAFICHFYNIYFAHSAGGRMIGRK 216
Query: 265 ISKKILEGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRI 324
++++IL+ +ELEFYKWD ++ LL++ REKLN++++ W+R+++N CL+E K F++ G I
Sbjct: 217 VAERILDNKELEFYKWDGELSQLLQNVREKLNKVAEEWTREEKNHCLEETEKSFKYSGEI 276
Query: 325 VRLII 329
+RLI+
Sbjct: 277 LRLIL 281
>AT2G26550.1 | chr2:11291584-11293426 REVERSE LENGTH=355
Length = 354
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 155/301 (51%), Gaps = 72/301 (23%)
Query: 85 GEAVGVAEEMRFVAMRLRNPKRTTLKMDDTGAEEEVGXXXXXXXXXXXXXXXXXXXXXXX 144
GE +G+ EEMRFVAMRLRN L + + + E
Sbjct: 71 GENIGITEEMRFVAMRLRNVNGKKLDLSEDKTDTEK-----------------EEEEEEE 113
Query: 145 XXXXXXXXXXXXWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARI 204
W PS EGF+KYLVDSKLVFDT+ERIV ES +V+Y YFR++GLER I
Sbjct: 114 DDDDDDEVKEETWKPSKEGFLKYLVDSKLVFDTIERIVDESENVSYAYFRRTGLERCESI 173
Query: 205 TKDLEWFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGG------ 258
KDL+W Q + +PEPS G +YA YL E A +AP FLSH+Y+IYF+H GG
Sbjct: 174 EKDLQWLREQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIAGGQVLVRQ 233
Query: 259 -----------------VAIGNKISK--------------------------------KI 269
+A G I K K+
Sbjct: 234 ESSIYREFCWFLVYFSHIAGGQVICKTASLIELEIDIDIVDSGELGLSGVLRLWWVSEKL 293
Query: 270 LEGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLII 329
LEG+ELEF +W+ D + LLK REKLN L +HWSR ++N CLKE AK F+++G+IVRLII
Sbjct: 294 LEGKELEFNRWEGDAQDLLKGVREKLNVLGEHWSRDEKNKCLKETAKAFKYMGQIVRLII 353
Query: 330 L 330
L
Sbjct: 354 L 354
>AT1G69720.1 | chr1:26227178-26228419 FORWARD LENGTH=286
Length = 285
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 147/245 (60%), Gaps = 32/245 (13%)
Query: 85 GEAVGVAEEMRFVAMRLRNPKRTTLKMDDTGAEEEVGXXXXXXXXXXXXXXXXXXXXXXX 144
GE+ G EEMRFVAMRL + ++ + EE
Sbjct: 72 GESKGFVEEMRFVAMRLHTKDQAREGEKESRSPEE------------------------- 106
Query: 145 XXXXXXXXXXXXWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARI 204
W P++EG++ +LVDSKLV+DT+E I+ S Y F+ +GLER+ +
Sbjct: 107 -------GPVAKWEPTVEGYLHFLVDSKLVYDTLEGIIDGSNFPTYAGFKNTGLERAESL 159
Query: 205 TKDLEWFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNK 264
KDLEWF QG +PEP G TY+ YL +LAE++ AF+ H+YNIYFAH+ GG IG K
Sbjct: 160 RKDLEWFKEQGYEIPEPMAPGKTYSEYLKDLAENDPQAFICHFYNIYFAHSAGGQMIGTK 219
Query: 265 ISKKILEGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRI 324
+SKKIL+ +ELEFYKWD + LL++ R+KLN++++ W+R++++ CL+E K F+ G I
Sbjct: 220 VSKKILDNKELEFYKWDGQLSQLLQNVRQKLNKVAEWWTREEKSHCLEETEKSFKFSGEI 279
Query: 325 VRLII 329
+RLI+
Sbjct: 280 LRLIL 284
>AT1G58300.1 | chr1:21628015-21629996 REVERSE LENGTH=284
Length = 283
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 122/173 (70%)
Query: 157 WMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEWFGGQGI 216
W ++EG++K+LVDSKLVF+T+ERI+ ES AY + +GLER+ +++DLEWF QG
Sbjct: 110 WNFTIEGYLKFLVDSKLVFETLERIINESAIQAYAGLKNTGLERAENLSRDLEWFKEQGY 169
Query: 217 AVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKILEGRELE 276
+PE G Y+ YL +AE + PAF+ H+YNI FAH+ GG IG K+++KIL+ +ELE
Sbjct: 170 EIPESMVPGKAYSQYLKNIAEKDPPAFICHFYNINFAHSAGGRMIGTKVAEKILDNKELE 229
Query: 277 FYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLII 329
FYKWD + LL++ E+LN++++ W+R+++N CL+E K F+ I R ++
Sbjct: 230 FYKWDGQLSELLQNVSEELNKVAELWTREEKNHCLEETEKSFKFYWEIFRYLL 282
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,627,768
Number of extensions: 166547
Number of successful extensions: 448
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)