BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0395000 Os03g0395000|AK073283
(330 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0395000 Similar to Heme oxygenase 2 (Fragment) 444 e-125
Os06g0603000 Similar to Heme oxygenase 1 (Fragment) 200 1e-51
>Os03g0395000 Similar to Heme oxygenase 2 (Fragment)
Length = 330
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/300 (76%), Positives = 229/300 (76%)
Query: 31 FTGLILTRDLAALTVARCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAVGV 90
FTGLILTRDLAALTVARC GEAVGV
Sbjct: 31 FTGLILTRDLAALTVARCAPSPPAPAAEAEAEAVAVDEAPPAKPRPRRYPRQYPGEAVGV 90
Query: 91 AEEMRFVAMRLRNPKRTTLKMDDTGAEEEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 150
AEEMRFVAMRLRNPKRTTLKMDDTGAEEEVG
Sbjct: 91 AEEMRFVAMRLRNPKRTTLKMDDTGAEEEVGDGVSEDASASEEEEEEEDDDDVVEEEEEG 150
Query: 151 XXXXXXWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEW 210
WMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEW
Sbjct: 151 AGLEGEWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEW 210
Query: 211 FGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKIL 270
FGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKIL
Sbjct: 211 FGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKIL 270
Query: 271 EGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLIIL 330
EGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLIIL
Sbjct: 271 EGRELEFYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLIIL 330
>Os06g0603000 Similar to Heme oxygenase 1 (Fragment)
Length = 289
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 126/173 (72%)
Query: 157 WMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEWFGGQGI 216
W PS++G++++LVDSKLVF+T+E IV + Y FR +GLERS ++ KDLEWF QG
Sbjct: 116 WEPSVDGYLRFLVDSKLVFETLETIVDRAAVPWYAEFRNTGLERSEQLKKDLEWFKEQGH 175
Query: 217 AVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKILEGRELE 276
+PEPS G+TYA+YL ELAE ++ AF+ H+YN+YFAHT GG IG K+S+ IL +ELE
Sbjct: 176 TIPEPSAPGTTYASYLEELAEKDSQAFICHFYNVYFAHTAGGRMIGKKVSENILNKKELE 235
Query: 277 FYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLII 329
FYKW+ ++ LL++ R KLNE++ W+R++++ CL E K F + G ++R I
Sbjct: 236 FYKWEGNLSQLLQNVRNKLNEVASSWTREEKDHCLDETEKSFSYSGDLLRHIF 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,123,508
Number of extensions: 253237
Number of successful extensions: 526
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)