Os03g0334200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0334200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.39 | 0.337 | 9.78 | 0.363 | 1.32 | -0.746 | -0.411 | -0.666 | 0.372 | 0.0922 | 23.5 | 692 | -- | -- |
| 51.88 | 0.335 | 9.8 | 0.28 | 1.33 | -0.615 | -0.309 | -- | 0.358 | 0.076 | 23.87 | 681 | -- | -- |
| 52.05 | 0.336 | 9.79 | 0.349 | 1.33 | -0.729 | -- | -0.467 | 0.369 | 0.096 | 23.41 | 677 | -- | -- |
| 52.28 | 0.337 | 9.8 | 0.286 | 1.33 | -0.651 | -- | -- | 0.353 | 0.0784 | 23.89 | 703 | -- | -- |
| 150.49 | 0.571 | 9.82 | 0.216 | -- | -1.37 | -- | -0.0859 | 0.251 | -- | 28.68 | 918 | -- | -- |
| 57.6 | 0.356 | 9.77 | 0.444 | 1.39 | -- | -0.337 | -- | 0.469 | 24 | -- | -- | -- | -- |
| 58.09 | 0.357 | 9.77 | 0.458 | 1.39 | -- | -- | -- | 0.47 | 24 | -- | -- | -- | -- |
| 149.76 | 0.57 | 9.81 | 0.102 | -- | -1.37 | -- | -- | 0.192 | -- | 28 | 879 | -- | -- |
| 54.15 | 0.343 | 9.81 | -- | 1.3 | -0.772 | -- | -- | 0.295 | 0.103 | 23.97 | 706 | -- | -- |
| 180.4 | 0.628 | 9.74 | 0.501 | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
| 63.61 | 0.373 | 9.78 | -- | 1.4 | -- | -- | -- | 0.419 | 24 | -- | -- | -- | -- |
| 150 | 0.57 | 9.81 | -- | -- | -1.41 | -- | -- | 0.173 | -- | 27.97 | 879 | -- | -- |
| 187.01 | 0.638 | 9.75 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 8 | 46.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 9 | 46.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 19 | 46.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 74 | 47.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 160 | 48.18 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 199 | 48.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 236 | 48.75 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 252 | 48.83 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 253 | 48.85 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 257 | 48.86 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 261 | 48.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 347 | 49.33 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 2 |
| 422 | 49.68 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 443 | 49.76 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 497 | 49.96 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 521 | 50.04 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 528 | 50.07 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 604 | 50.36 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 682 | 50.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 13 |
| 722 | 50.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 809 | 50.88 | temperature | 30 | 30 | < th | dose independent | rect. | 20 | 16 |
| 911 | 51.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |