BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0334200 Os03g0334200|AK120329
(645 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05190.1 | chr5:1541853-1543875 FORWARD LENGTH=616 56 5e-08
AT3G61670.1 | chr3:22819052-22821870 FORWARD LENGTH=791 56 7e-08
AT3G56410.2 | chr3:20916320-20921134 REVERSE LENGTH=1536 54 2e-07
AT2G46380.1 | chr2:19039377-19042171 FORWARD LENGTH=769 52 1e-06
>AT5G05190.1 | chr5:1541853-1543875 FORWARD LENGTH=616
Length = 615
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 1 MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIR 44
MAS +RLVRCPKC IL E V VY+CGGC IL+ K R
Sbjct: 1 MASQTGQKIRLVRCPKCLKILQEDEDVPVYQCGGCSAILQAKRR 44
>AT3G61670.1 | chr3:22819052-22821870 FORWARD LENGTH=791
Length = 790
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9 LRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQV 56
+RLVRCPKC N+L EP ++CGGC T+LR K + +V+ K V
Sbjct: 7 VRLVRCPKCENLLSEPEDSPFFQCGGCFTVLRAKTKEREADSVSVKSV 54
>AT3G56410.2 | chr3:20916320-20921134 REVERSE LENGTH=1536
Length = 1535
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 10 RLVRCPKCYNILPEPPSVEVYKCGGCDTILRVK 42
R+VRCPKC+ +L EP YKCGGCD+IL K
Sbjct: 65 RIVRCPKCHKLLQEPLDATSYKCGGCDSILHAK 97
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 447 GAPFVVCSGCNRLVQLPTDFAVPSKGTRR---LQCGSCSEILSYSYRDPAKKKLQSPS 501
GAPF CS C L+QLP V +G R+ ++CGSCS +L +S R+ A L SPS
Sbjct: 379 GAPFATCSYCLELLQLP---QVSPQGKRQRYQVRCGSCSGVLKFSIREKADTVLDSPS 433
>AT2G46380.1 | chr2:19039377-19042171 FORWARD LENGTH=769
Length = 768
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 1 MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQVRQDS 60
MA +T RLVRCPKC N+L EP ++CGGC T+L K + ++ K V S
Sbjct: 1 MAESSTIEARLVRCPKCKNLLQEPKDCPFFQCGGCGTVLCAKNKDREADLLSVKSVENRS 60
Query: 61 DDF 63
+
Sbjct: 61 KEI 63
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,267,690
Number of extensions: 631326
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2083
Number of HSP's successfully gapped: 7
Length of query: 645
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 540
Effective length of database: 8,227,889
Effective search space: 4443060060
Effective search space used: 4443060060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 115 (48.9 bits)