BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0334200 Os03g0334200|AK120329
(645 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0334200 Conserved hypothetical protein 1155 0.0
Os07g0680600 Conserved hypothetical protein 174 2e-43
>Os03g0334200 Conserved hypothetical protein
Length = 645
Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/645 (90%), Positives = 586/645 (90%)
Query: 1 MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQVRQDS 60
MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQVRQDS
Sbjct: 1 MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQVRQDS 60
Query: 61 DDFSVATTASNGVHPQKKDIAFSGATMDRSRTPDAPSTDTEHASNGTSSNDNGHAMSVEN 120
DDFSVATTASNGVHPQKKDIAFSGATMDRSRTPDAPSTDTEHASNGTSSNDNGHAMSVEN
Sbjct: 61 DDFSVATTASNGVHPQKKDIAFSGATMDRSRTPDAPSTDTEHASNGTSSNDNGHAMSVEN 120
Query: 121 NASEVADTDNKEDCNLDGQNTSGRIEGPSEEIPPNANGMDIDSDREETYNVEGIAENSED 180
NASEVADTDNKEDCNLDGQNTSGRIEGPSEEIPPNANGMDIDSDREETYNVEGIAENSED
Sbjct: 121 NASEVADTDNKEDCNLDGQNTSGRIEGPSEEIPPNANGMDIDSDREETYNVEGIAENSED 180
Query: 181 CRVRGGGDIDTECNLSLPEHELPLHQESKSDSELKEATKTEDEATKKGHLVRVQSRSCDL 240
CRVRGGGDIDTECNLSLPEHELPLHQESKSDSELKEATKTEDEATKKGHLVRVQSRSCDL
Sbjct: 181 CRVRGGGDIDTECNLSLPEHELPLHQESKSDSELKEATKTEDEATKKGHLVRVQSRSCDL 240
Query: 241 RESHRASAGSSMDFHSARTSLQSKSFRASEPLQSKIMKTVDELRGDLSEFFSKPEEEGED 300
RESHRASAGSSMDFHSARTSLQSKSFRASEPLQSKIMKTVDELRGDLSEFFSKPEEEGED
Sbjct: 241 RESHRASAGSSMDFHSARTSLQSKSFRASEPLQSKIMKTVDELRGDLSEFFSKPEEEGED 300
Query: 301 DDDRKPKTAAYPPRPSKQDGYSKPRAPFTSSVPLTAYHPAAKHSGHVSRLSRSGQVPPPP 360
DDDRKPKTAAYPPRPSKQDGYSKPRAPFTSSVPLTAYHPAAKHSGHVSRLSRSGQVPPPP
Sbjct: 301 DDDRKPKTAAYPPRPSKQDGYSKPRAPFTSSVPLTAYHPAAKHSGHVSRLSRSGQVPPPP 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXDQMETMRRPCSHDXXXXXXXXXXXXXXXXXXWKSQEG 420
DQMETMRRPCSHD WKSQEG
Sbjct: 361 HHHRELSSLRYRRRRRAYSCCHSDQMETMRRPCSHDCCHYHSCRPPPCHHHDRPWKSQEG 420
Query: 421 AMQRPPVQETTXXXXXXXXXXXXVLRGAPFVVCSGCNRLVQLPTDFAVPSKGTRRLQCGS 480
AMQRPPVQETT VLRGAPFVVCSGCNRLVQLPTDFAVPSKGTRRLQCGS
Sbjct: 421 AMQRPPVQETTRRRAPPRHHCRPVLRGAPFVVCSGCNRLVQLPTDFAVPSKGTRRLQCGS 480
Query: 481 CSEILSYSYRDPAKKKLQSPSGDGEECQYSTDDYEIHQAAGDADPFSYSEEYGVISYSTE 540
CSEILSYSYRDPAKKKLQSPSGDGEECQYSTDDYEIHQAAGDADPFSYSEEYGVISYSTE
Sbjct: 481 CSEILSYSYRDPAKKKLQSPSGDGEECQYSTDDYEIHQAAGDADPFSYSEEYGVISYSTE 540
Query: 541 EEQQPLHVSRNSSFDTVDDERSAKLHRLMGYSSASEXXXXXXSPDLYESFGERTPAARTS 600
EEQQPLHVSRNSSFDTVDDERSAKLHRLMGYSSASE SPDLYESFGERTPAARTS
Sbjct: 541 EEQQPLHVSRNSSFDTVDDERSAKLHRLMGYSSASELLRLRRSPDLYESFGERTPAARTS 600
Query: 601 DTKGKAICVADEEEHPSAKVRRGRGLPLPGILKKGIHGLESLKLR 645
DTKGKAICVADEEEHPSAKVRRGRGLPLPGILKKGIHGLESLKLR
Sbjct: 601 DTKGKAICVADEEEHPSAKVRRGRGLPLPGILKKGIHGLESLKLR 645
>Os07g0680600 Conserved hypothetical protein
Length = 642
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 139/230 (60%), Gaps = 39/230 (16%)
Query: 444 VLRGAPFVVCSGCNRLVQLPTDFAVPSKGTRRLQCGSCSEILSYSYRDPAKKKLQSPSGD 503
VL+GAPF++CS C +LVQ+P DFAV +K R+L+CGSCS +LSYSYRDP +KK GD
Sbjct: 423 VLKGAPFIICSSCFKLVQVPADFAVSTKTVRKLRCGSCSAVLSYSYRDPDRKK----HGD 478
Query: 504 GEECQYSTDDYEI----HQAAGDADPFSYSEEYGV--ISYSTEEEQQPLHVSRNSSFDTV 557
QYS D H GD F++ +++G +SYSTE+E QPLHVSRNSSF+TV
Sbjct: 479 ----QYSADGSPAAPRGHGRRGDK--FAFLDDFGHVDVSYSTEDE-QPLHVSRNSSFNTV 531
Query: 558 DDERSA-------KLHRLMGYSSASEXXXXXXSPDLYESFGERTP--AARTSDTKGKAIC 608
D+ +A LHRLMGY SAS+ SPDLYESF ERT AA D KGK +C
Sbjct: 532 DEMAAAATQQHGSSLHRLMGYGSASDLLFRQHSPDLYESFSERTTPEAAALYDRKGKGVC 591
Query: 609 VADEEEHPSAKVR------------RGRGLPLPGILK-KGIHGLESLKLR 645
V +++ RG G PLPGIL KG G+ +++++
Sbjct: 592 VDLDDDGGDDDSDEDCSGALKRSRLRGSGWPLPGILNSKGTTGMGAIRIK 641
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 170/371 (45%), Gaps = 44/371 (11%)
Query: 1 MASVNTGGLRLVRCPKCYNILPEPPSVEVYKCGGCDTILRVKIRPSNGQNVATKQVRQDS 60
MA + +R VRCPKC+++L EP VY+CGGC T LR K R N Q V
Sbjct: 1 MAISDARVVRHVRCPKCFSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEV--------- 51
Query: 61 DDFSVATTASNGVHPQKKDIAFSGATMDRSRTPDAPSTDTEHASNGTSSNDNGHAMSVEN 120
S ++ +G+ P K + S TP+A + + ++ TS + +S N
Sbjct: 52 --ISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLVSARN 109
Query: 121 NASEVADTDNKEDCNLDGQNTSGRIEGPSEEIPPNANGMDID---SDREETYNVEGIAEN 177
NA E E Q+TS + G SE++ D SDR V+ +E+
Sbjct: 110 NAPEPERVVPAEKEEEHVQSTSQQAVGNSEDLTRGDAATAADAQCSDRASEGKVQ-FSES 168
Query: 178 SEDCRVRGGGDIDTECNLSLPEHELPLHQESKSDSELKEATKTEDEATKKGHLVRVQSRS 237
ED N L ++ +++SD+E K++++ ++ ++ +V + S
Sbjct: 169 RED------------SNTEL--QDVQRSDQTESDAEGKKSSEETSQSPRRD-VVELPPSS 213
Query: 238 CDLRESHRASAGSSMDFHSARTSLQSKSFRASE---PLQSKIMKTVDELRGDLSEFFSKP 294
+S A A + A + + R+ E PLQ +I+KTVD L+ DLSE FSK
Sbjct: 214 VQTPDSQPAPAVLKREDDPATSPPHGHARRSPESLAPLQKRILKTVDNLKDDLSELFSKS 273
Query: 295 EEEGEDDDDRKPKTAAYPPRPSKQDGYSKPRAPFTSSVPLTAY---HPAAKHSGHVSRLS 351
E KP+T A PPR +Q+GY+ A ++ + A H A G+++R
Sbjct: 274 PELN------KPRTHARPPRLPRQEGYAPRDAAMAAAASIQAIRARHAAVHRPGYIARAG 327
Query: 352 RSGQV--PPPP 360
+ GQ+ PPPP
Sbjct: 328 KPGQLAAPPPP 338
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,211,087
Number of extensions: 1035606
Number of successful extensions: 3441
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3430
Number of HSP's successfully gapped: 6
Length of query: 645
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 538
Effective length of database: 11,448,903
Effective search space: 6159509814
Effective search space used: 6159509814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)