Os03g0326300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0326300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.24 | 0.171 | 12.7 | 1.05 | 0.112 | -0.31 | 0.12 | 0.255 | 0.514 | 19.1 | 81.32 | 3520 | -- | -- |
| 13.27 | 0.17 | 12.7 | 1.02 | 0.108 | -0.295 | 0.15 | -- | 0.508 | 19.2 | 81.93 | 3640 | -- | -- |
| 13.27 | 0.17 | 12.7 | 1.05 | 0.113 | -0.318 | -- | 0.276 | 0.519 | 19.5 | 81.64 | 3569 | -- | -- |
| 13.3 | 0.17 | 12.7 | 1.03 | 0.109 | -0.292 | -- | -- | 0.499 | 19.5 | 80.9 | 3649 | -- | -- |
| 13.87 | 0.173 | 12.7 | 1.02 | -- | -0.279 | -- | -0.00309 | 0.516 | -- | 82 | 4052 | -- | -- |
| 14.32 | 0.177 | 12.7 | 1.04 | 0.0701 | -- | 0.234 | -- | 0.428 | 18.1 | -- | -- | -- | -- |
| 14.4 | 0.178 | 12.7 | 1.04 | 0.0762 | -- | -- | -- | 0.428 | 19.5 | -- | -- | -- | -- |
| 13.84 | 0.173 | 12.7 | 1.02 | -- | -0.282 | -- | -- | 0.513 | -- | 79.81 | 4060 | -- | -- |
| 40.21 | 0.295 | 12.7 | -- | 0.0829 | -0.495 | -- | -- | 0.487 | 19.9 | 82.54 | 3999 | -- | -- |
| 14.71 | 0.179 | 12.7 | 1.04 | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
| 42.77 | 0.306 | 12.7 | -- | 0.0697 | -- | -- | -- | 0.313 | 20.6 | -- | -- | -- | -- |
| 19.66 | 0.207 | 12.8 | -- | -- | -0.93 | -- | -- | 0.258 | -- | 63.69 | 47520 | -- | -- |
| 43.04 | 0.306 | 12.7 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.07 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 2 | 12.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 3 | 12.13 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 18 | 12.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 10 |
| 22 | 12.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 24 | 12.38 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 26 | 12.38 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 30 | 12.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 31 | 12.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 35 | 12.39 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 42 | 12.40 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 44 | 12.40 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 48 | 12.41 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 53 | 12.42 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 55 | 12.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 75 | 12.45 | wind | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 89 | 12.46 | wind | 1 | 43200 | > th | dose independent | sin | 5 | NA |
| 134 | 12.50 | wind | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 266 | 12.60 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 267 | 12.60 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 320 | 12.63 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 361 | 12.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 377 | 12.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 446 | 12.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 494 | 12.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 505 | 12.73 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 633 | 12.81 | wind | 1 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 725 | 12.84 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 759 | 12.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 776 | 12.87 | wind | 1 | 43200 | < th | dose independent | no | NA | NA |
| 778 | 12.87 | wind | 1 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 822 | 12.89 | wind | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 851 | 12.91 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 883 | 12.93 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 953 | 12.96 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 18 |
| 967 | 12.97 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 970 | 12.97 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 978 | 12.98 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |