BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0326300 Os03g0326300|AK066058
(445 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14180.1 | chr1:4847828-4848970 FORWARD LENGTH=349 99 4e-21
AT5G18260.1 | chr5:6036226-6037295 REVERSE LENGTH=321 98 9e-21
AT4G39140.1 | chr4:18229637-18231282 REVERSE LENGTH=430 77 2e-14
AT2G21500.2 | chr2:9207965-9209575 REVERSE LENGTH=422 64 1e-10
AT1G19680.1 | chr1:6805909-6807682 FORWARD LENGTH=445 63 4e-10
AT1G75400.1 | chr1:28297609-28299464 FORWARD LENGTH=456 62 7e-10
>AT1G14180.1 | chr1:4847828-4848970 FORWARD LENGTH=349
Length = 348
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 86/185 (46%), Gaps = 50/185 (27%)
Query: 152 RNHLGRRSFMSKPVYPLVFRNPVSEAEASGMPEASNIGRTTPSDDSPVWRRSLASPELKF 211
RN RR F+SKPV+P++ + AS +A + TPS V + P L +
Sbjct: 111 RNSSSRRFFLSKPVHPILHPSDNVRDTASDSADACSWSSGTPSSIDSV---DVPEPVLDW 167
Query: 212 HNALSEFRKVEASPEPNTSSRREGFRWSNASSYDFGYDGDAIDISDHISVESQRSPTSSV 271
+N ++ ++V AS
Sbjct: 168 NNNSTKAQQVAASST--------------------------------------------- 182
Query: 272 RFLKCGLCERFLRQKSPWTSNRIVQNSDMPVAAVLPCRHVFHADCLEESTPKSQVHEPPC 331
KCGLC R+L QKSPW S IV+N DMPV VL C+HVFH +CL++STPK Q ++P C
Sbjct: 183 --FKCGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLC 240
Query: 332 PLCTR 336
P+CT+
Sbjct: 241 PICTK 245
>AT5G18260.1 | chr5:6036226-6037295 REVERSE LENGTH=321
Length = 320
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 240 NASSYDFGYDGDAIDISDHISVESQRSPTSSVRFLKCGLCERFLRQKSPWTSNRIVQNSD 299
N+SS D D ++ S+ V + RS S+ +CG+C++ L QKSPW+S +I+++ D
Sbjct: 159 NSSSNDMLLD---VERSNDTEVANPRSEQGSMTHQRCGICKKLLSQKSPWSSYKILRSRD 215
Query: 300 MPVAAVLPCRHVFHADCLEESTPKSQVHEPPCPLC--TRGTDDEGCVSFSEPLHVALRSA 357
MP V PC HV+H +CL+++TP +Q +P CP+C T G ++ ++ E L +ALRS
Sbjct: 216 MPATGVFPCHHVYHVECLDKATPTAQTRDPSCPVCSNTIGVMEQPLIA-PETLQMALRSL 274
Query: 358 RR 359
RR
Sbjct: 275 RR 276
>AT4G39140.1 | chr4:18229637-18231282 REVERSE LENGTH=430
Length = 429
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 237 RWSNASSYDFGYDGDAIDIS-DHISVESQRSPTSSVRFLKCGLCERFLRQKSPWTSNRIV 295
R + A SYD YD D + D I R S + CG C R L +KS W+S +I
Sbjct: 223 RSNKALSYD-NYDNDCFGLQRDKIDHHGNR--MSKHQQHTCGACSRPLSEKSLWSSQKIF 279
Query: 296 QNSDMPVAAVLPCRHVFHADCLEESTPKSQVHEPPCPLCTRG 337
+++ V+A+L C HV+H +CLE+ TP+ +P CP+CT G
Sbjct: 280 MTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMG 321
>AT2G21500.2 | chr2:9207965-9209575 REVERSE LENGTH=422
Length = 421
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 188 IGRTTPSDDSPVWRRSLASPELKFHNALSEFRKVEASPEPNTSSRREGFRWSNASSYDFG 247
G T+PS RS A+ E + + S+ ++A E SRRE + N FG
Sbjct: 182 FGFTSPS-------RSSATEERLGNESQSDGWSMQAFSEMMAYSRRESCSYDNEC---FG 231
Query: 248 YDGDAIDISDHISVESQRSPTSSVRFLKCGLCERFLRQKSPWTSNRIVQNSDMPVAAVLP 307
D ID ++ S++S CG C R L +KS +S +I +++ VAA+L
Sbjct: 232 LRRDKID-----NLGSRKSNDQQ----NCGACSRSLSEKSLLSSQKIFATNELSVAAILA 282
Query: 308 CRHVFHADCLEESTPKSQVHEPPCPLCTRG 337
C HV+H++CLE+ TP+ +P CP+CT G
Sbjct: 283 CGHVYHSECLEQMTPEIDKFDPSCPICTLG 312
>AT1G19680.1 | chr1:6805909-6807682 FORWARD LENGTH=445
Length = 444
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 276 CGLCERFLRQKSPWTSNRIVQNSDMPVAAVLPCRHVFHADCLEESTPKSQVHEPPCPLCT 335
CG C + L ++SP V D+P+ AVL C HV+HA CLE T +++ ++P CP+CT
Sbjct: 273 CGRCSKLLTERSP------VARFDLPIPAVLACGHVYHAACLETMTNETEKYDPTCPICT 326
>AT1G75400.1 | chr1:28297609-28299464 FORWARD LENGTH=456
Length = 455
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 276 CGLCERFLRQKSPWTSNRIVQNSDMPVAAVLPCRHVFHADCLEESTPKSQVHEPPCPLCT 335
CG C + L ++S + ++P+AAVL C HV+HA+CLE T + ++P CP+CT
Sbjct: 281 CGACSKLLTERSS------IATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICT 334
Query: 336 RG 337
G
Sbjct: 335 IG 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,255,255
Number of extensions: 366587
Number of successful extensions: 1029
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 6
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)