Os03g0307300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (OsNAS1).
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Os03g0307300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (OsNAS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.08 | 0.364 | 3.13 | -0.202 | 0.185 | 0.171 | -0.0837 | -1.37 | -0.056 | 7.94 | 47.01 | 1374 | -- | -- |
| 61.05 | 0.364 | 3.12 | 0.00587 | 0.184 | 0.381 | -0.0784 | -- | 0.000509 | 8.01 | 57.16 | 1356 | -- | -- |
| 60.09 | 0.361 | 3.13 | -0.2 | 0.186 | 0.172 | -- | -1.37 | -0.0551 | 8.1 | 47 | 1374 | -- | -- |
| 61.06 | 0.364 | 3.12 | -0.00667 | 0.189 | 0.383 | -- | -- | -0.00259 | 8.13 | 56.94 | 1356 | -- | -- |
| 61.97 | 0.367 | 3.14 | -0.201 | -- | 0.168 | -- | -1.36 | -0.0532 | -- | 47.05 | 1382 | -- | -- |
| 62.97 | 0.372 | 3.13 | -0.0924 | 0.184 | -- | -0.0827 | -- | -0.0263 | 7.87 | -- | -- | -- | -- |
| 62.98 | 0.372 | 3.13 | -0.0942 | 0.183 | -- | -- | -- | -0.0259 | 8.06 | -- | -- | -- | -- |
| 63 | 0.37 | 3.12 | -0.00679 | -- | 0.374 | -- | -- | 0.00276 | -- | 57.17 | 1379 | -- | -- |
| 61.06 | 0.364 | 3.12 | -- | 0.189 | 0.386 | -- | -- | -0.00236 | 8.13 | 56.96 | 1356 | -- | -- |
| 64.82 | 0.376 | 3.13 | -0.0925 | -- | -- | -- | -- | -0.0237 | -- | -- | -- | -- | -- |
| 63.22 | 0.372 | 3.12 | -- | 0.183 | -- | -- | -- | -0.0155 | 8.09 | -- | -- | -- | -- |
| 63 | 0.37 | 3.12 | -- | -- | 0.378 | -- | -- | 0.00302 | -- | 57.33 | 1379 | -- | -- |
| 65.05 | 0.376 | 3.13 | -- | -- | -- | -- | -- | -0.0134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.98 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 11 | 55.98 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 59 | 57.21 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 69 | 57.21 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 105 | 57.69 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 108 | 57.83 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 111 | 57.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 126 | 57.97 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 133 | 58.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 185 | 58.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 195 | 58.23 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 230 | 58.47 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 22 | 8 |
| 244 | 58.62 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 245 | 58.62 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 255 | 58.72 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 395 | 59.32 | temperature | 20 | 90 | < th | dose dependent | sin | 8 | NA |
| 399 | 59.34 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 9 | NA |
| 438 | 59.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 475 | 59.58 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 494 | 59.63 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 506 | 59.64 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 18 |
| 536 | 59.70 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 547 | 59.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 565 | 59.74 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 568 | 59.74 | radiation | 40 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 613 | 59.79 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 623 | 59.80 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 624 | 59.80 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 660 | 59.83 | radiation | 40 | 1440 | > th | dose dependent | sin | 11 | NA |
| 691 | 59.87 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 703 | 59.87 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 761 | 59.90 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 10 |
| 768 | 59.90 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 811 | 59.94 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 842 | 59.95 | radiation | 40 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 848 | 59.96 | radiation | 40 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 851 | 59.96 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 871 | 59.97 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 885 | 59.97 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 901 | 59.98 | radiation | 40 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 932 | 59.99 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 12 | 6 |
| 934 | 59.99 | radiation | 40 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 949 | 60.00 | humidity | 70 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 970 | 60.01 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 2 |