BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0307300 Os03g0307300|AK112069
(332 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56430.1 | chr1:21137023-21137997 FORWARD LENGTH=325 293 1e-79
AT1G09240.1 | chr1:2984950-2985912 FORWARD LENGTH=321 286 1e-77
AT5G04950.1 | chr5:1457876-1458838 REVERSE LENGTH=321 273 1e-73
AT5G56080.1 | chr5:22711402-22712364 REVERSE LENGTH=321 270 7e-73
AT4G26483.1 | chr4:13376647-13376970 REVERSE LENGTH=85 54 2e-07
>AT1G56430.1 | chr1:21137023-21137997 FORWARD LENGTH=325
Length = 324
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/272 (52%), Positives = 189/272 (69%), Gaps = 5/272 (1%)
Query: 11 LVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASP-VDVAKLGPEAQAMREELIR 69
LV KI L+ ISKL +L P +VD LF LV+ C+P +P +DV K+ Q MR LI+
Sbjct: 9 LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68
Query: 70 LCSAAEGHLEAHYADMLAAF-DNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGIAPTRV 128
+C AEG+LE H++ +L +F DNPL HL FPYY NY+ LSKLE+DLL + + G P V
Sbjct: 69 ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFVPRTV 128
Query: 129 AFVGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAFHTADV 188
AF+GSGPLP +S+VLA+ HL D++F N+D +AN A RL +D L RM FHT D+
Sbjct: 129 AFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLV-SSDPDLSQRMFFHTVDI 187
Query: 189 ATLTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFLYPIVD 248
+T L +DVVFLAALVGM +EK V+ HL HM+ GA L++RSAHG R FLYPIV+
Sbjct: 188 MDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVE 247
Query: 249 PEDVRRGGFDVLAVCHPEDEVINSVIVARKVG 280
P D+ GF+VL+V HP DEVINS++++RK+G
Sbjct: 248 PCDLE--GFEVLSVYHPTDEVINSIVISRKLG 277
>AT1G09240.1 | chr1:2984950-2985912 FORWARD LENGTH=321
Length = 320
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/280 (50%), Positives = 192/280 (68%), Gaps = 8/280 (2%)
Query: 1 MEAQNQEVAALVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASP-VDVAKLGPE 59
M Q+++ LV+ I L+ ISKL SL PS +V+ LF LV+ C+P +P +DV K+
Sbjct: 1 MGCQDEQ---LVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDR 57
Query: 60 AQAMREELIRLCSAAEGHLEAHYADMLAAF-DNPLDHLARFPYYGNYVNLSKLEYDLLVR 118
Q +R LI++C AEGHLE H++ +L ++ DNPL HL FPYY NY+ L KLE+DLL +
Sbjct: 58 VQEIRLNLIKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQ 117
Query: 119 YVPGIAPTRVAFVGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLG 178
+ G P VAF+GSGPLP +S+VLA+ HL D +F N+D +AN A L +D +
Sbjct: 118 NLNGFVPKSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLAS-LLVSSDPDIS 176
Query: 179 ARMAFHTADVATLTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHG 238
RM FHT D+ +T L ++DVVFLAALVGM EEK VI HL HMA GA L++RSAHG
Sbjct: 177 QRMFFHTVDIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHG 236
Query: 239 ARGFLYPIVDPEDVRRGGFDVLAVCHPEDEVINSVIVARK 278
R FLYPIV+P D++ GF+VL++ HP D+VINSV++++K
Sbjct: 237 PRAFLYPIVEPCDLQ--GFEVLSIYHPTDDVINSVVISKK 274
>AT5G04950.1 | chr5:1457876-1458838 REVERSE LENGTH=321
Length = 320
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 181/284 (63%), Gaps = 11/284 (3%)
Query: 1 MEAQNQEVAALVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPA-SPVDVAKLGPE 59
M QN V V++I L+ ISKL SL PS VD LF LV+ C+P + +DV + E
Sbjct: 1 MACQNNLV---VKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEE 57
Query: 60 AQAMREELIRLCSAAEGHLEAHYADMLAAFD---NPLDHLARFPYYGNYVNLSKLEYDLL 116
+ MR LI+LC AEG+LE H++ +L + NPLDHL FPYY NY+ L KLE+DLL
Sbjct: 58 VKDMRANLIKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLL 117
Query: 117 VRYVPGIAPTRVAFVGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEG 176
++ + PT++AFVGSGP+P +S+VLA HLP+ F N+D AN A L D
Sbjct: 118 SQHSSHV-PTKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLV-SRDPD 175
Query: 177 LGARMAFHTADVATLTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSA 236
L RM FHT DV T L YDVVFLAALVGM E K I HL HMA GA L++RSA
Sbjct: 176 LSKRMIFHTTDVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSA 235
Query: 237 HGARGFLYPIVDPEDVRRGGFDVLAVCHPEDEVINSVIVARKVG 280
H R FLYPIVD D++ GF +L + HP D+V+NSV++ARK+G
Sbjct: 236 HALRAFLYPIVDSSDLK--GFQLLTIYHPTDDVVNSVVIARKLG 277
>AT5G56080.1 | chr5:22711402-22712364 REVERSE LENGTH=321
Length = 320
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/277 (50%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 7 EVAALVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPA-SPVDVAKLGPE-AQAMR 64
E +V++I L+ IS L SL PS VD LF LV+ C+P + +DV ++ E + MR
Sbjct: 4 ENNLVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMR 63
Query: 65 EELIRLCSAAEGHLEAHYADMLAAF-DNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGI 123
LI+LC AEG+LE H++ +L +F DNPL+HL FPYY NY+ L KLE+DLL ++ +
Sbjct: 64 SHLIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHTTHV 123
Query: 124 APTRVAFVGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAF 183
PT+VAF+GSGP+P +S+VLA HLP+ F N+D AN A L D L RM F
Sbjct: 124 -PTKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLV-SRDSDLSKRMIF 181
Query: 184 HTADVATLTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFL 243
HT DV L YDVVFLAALVGM E K I HL HMA GA +++RSAHG R FL
Sbjct: 182 HTTDVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFL 241
Query: 244 YPIVDPEDVRRGGFDVLAVCHPEDEVINSVIVARKVG 280
YPIVD D++ GF+VL + HP D+V+NSV++ARK+G
Sbjct: 242 YPIVDSCDLK--GFEVLTIYHPSDDVVNSVVIARKLG 276
>AT4G26483.1 | chr4:13376647-13376970 REVERSE LENGTH=85
Length = 84
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Query: 225 MADGAALVVRSAHGARGFLYPIVDPEDVRRGGFDVLAVCHP--EDEVINSVIVARKV 279
M GA L++RSA G R FLY VDP D++ GF+VL + HP D +NSV+VARK+
Sbjct: 1 MDPGALLMLRSARGLRSFLYVDVDPCDLK--GFEVLEIYHPSMSDGFVNSVMVARKL 55
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,366,847
Number of extensions: 247535
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)