Os03g0305500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Argininosuccinate lyase domain containing protein.
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Os03g0305500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Argininosuccinate lyase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.13 | 0.349 | 12.1 | 0.0581 | 1.33 | 0.849 | 1.22 | 2.11 | -0.0356 | 20.5 | 4.719 | 221 | -- | -- |
| 63.12 | 0.37 | 12.1 | 0.0493 | 1.33 | 0.687 | 0.805 | -- | -0.0494 | 20.1 | 8.328 | 218 | -- | -- |
| 59.29 | 0.359 | 12.1 | 0.0216 | 1.31 | 0.851 | -- | 1.67 | -0.0393 | 20.5 | 7.579 | 226 | -- | -- |
| 64.89 | 0.375 | 12.1 | 0.0434 | 1.33 | 0.795 | -- | -- | -0.0324 | 20.4 | 5.234 | 220 | -- | -- |
| 86.8 | 0.434 | 12 | 0.0947 | -- | 1.53 | -- | 1.68 | -0.0948 | -- | -10.61 | 757 | -- | -- |
| 69.87 | 0.392 | 12 | 0.0791 | 1.37 | -- | 1.34 | -- | 0.0136 | 19 | -- | -- | -- | -- |
| 74.36 | 0.404 | 12 | 0.0524 | 1.37 | -- | -- | -- | 0.0159 | 19.1 | -- | -- | -- | -- |
| 90.24 | 0.442 | 12 | -0.058 | -- | 1.51 | -- | -- | -0.159 | -- | -8.908 | 780 | -- | -- |
| 64.89 | 0.375 | 12.1 | -- | 1.34 | 0.798 | -- | -- | -0.0444 | 20.4 | 4.911 | 220 | -- | -- |
| 173.16 | 0.615 | 12 | 0.0261 | -- | -- | -- | -- | -0.00859 | -- | -- | -- | -- | -- |
| 74.44 | 0.404 | 12 | -- | 1.37 | -- | -- | -- | 0.01 | 19.1 | -- | -- | -- | -- |
| 90.33 | 0.443 | 12 | -- | -- | 1.51 | -- | -- | -0.152 | -- | -13.25 | 780 | -- | -- |
| 173.18 | 0.614 | 12 | -- | -- | -- | -- | -- | -0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 13 | 50.77 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 16 | 50.91 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 22 | 50.97 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 37 | 51.26 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 51 | 51.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 86 | 52.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 87 | 52.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 88 | 52.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 94 | 52.12 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 106 | 52.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 152 | 52.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 210 | 53.22 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 225 | 53.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 242 | 53.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 14 |
| 290 | 53.72 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 326 | 53.92 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 431 | 54.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 438 | 54.56 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 462 | 54.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 510 | 54.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 511 | 54.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 535 | 54.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 636 | 55.22 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 669 | 55.29 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 689 | 55.34 | radiation | 30 | 270 | > th | dose dependent | sin | 6 | NA |
| 789 | 55.62 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 795 | 55.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 817 | 55.67 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 23 |
| 833 | 55.68 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 14 |
| 841 | 55.69 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |
| 927 | 55.82 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 12 |